Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN1AP35498 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.76■■□□□ 1.39
SCN1AP35498 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23.76■■□□□ 1.39
SCN1AP35498 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN1AP35498 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN1AP35498 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN1AP35498 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.76■■□□□ 1.39
SCN1AP35498 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.76■■□□□ 1.39
SCN1AP35498 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN1AP35498 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
SCN1AP35498 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN1AP35498 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.75■■□□□ 1.39
SCN1AP35498 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
SCN1AP35498 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN1AP35498 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SCN1AP35498 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
SCN1AP35498 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SCN1AP35498 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SCN1AP35498 AC126544.1-201ENST00000580842 1059 ntBASIC23.74■■□□□ 1.39
SCN1AP35498 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
SCN1AP35498 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
SCN1AP35498 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SCN1AP35498 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SCN1AP35498 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
SCN1AP35498 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SCN1AP35498 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.73■■□□□ 1.39
SCN1AP35498 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC23.73■■□□□ 1.39
SCN1AP35498 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SCN1AP35498 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC23.73■■□□□ 1.39
SCN1AP35498 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN1AP35498 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN1AP35498 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC23.73■■□□□ 1.39
SCN1AP35498 RARRES2P6-201ENST00000567333 442 ntBASIC23.72■■□□□ 1.39
SCN1AP35498 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.72■■□□□ 1.39
SCN1AP35498 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.72■■□□□ 1.39
SCN1AP35498 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN1AP35498 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC23.72■■□□□ 1.39
SCN1AP35498 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN1AP35498 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SCN1AP35498 AC026271.2-201ENST00000428091 497 ntBASIC23.72■■□□□ 1.39
SCN1AP35498 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.72■■□□□ 1.39
SCN1AP35498 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.72■■□□□ 1.39
SCN1AP35498 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN1AP35498 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN1AP35498 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SCN1AP35498 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.71■■□□□ 1.39
SCN1AP35498 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
SCN1AP35498 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC23.71■■□□□ 1.39
SCN1AP35498 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN1AP35498 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SCN1AP35498 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
SCN1AP35498 MIR935-201ENST00000401179 91 ntBASIC23.71■■□□□ 1.39
SCN1AP35498 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.71■■□□□ 1.39
SCN1AP35498 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.71■■□□□ 1.39
SCN1AP35498 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.71■■□□□ 1.39
SCN1AP35498 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
SCN1AP35498 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC23.7■■□□□ 1.38
SCN1AP35498 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SCN1AP35498 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
SCN1AP35498 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.69■■□□□ 1.38
SCN1AP35498 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.69■■□□□ 1.38
SCN1AP35498 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SCN1AP35498 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.69■■□□□ 1.38
SCN1AP35498 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN1AP35498 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.68■■□□□ 1.38
SCN1AP35498 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN1AP35498 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.68■■□□□ 1.38
SCN1AP35498 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SCN1AP35498 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SCN1AP35498 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.68■■□□□ 1.38
SCN1AP35498 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.68■■□□□ 1.38
SCN1AP35498 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
SCN1AP35498 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.68■■□□□ 1.38
SCN1AP35498 STX4-202ENST00000394998 1498 ntTSL 2 BASIC23.68■■□□□ 1.38
SCN1AP35498 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
SCN1AP35498 IGHV3-19-201ENST00000521488 291 ntBASIC23.67■■□□□ 1.38
SCN1AP35498 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms