Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CDH3P22223 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
CDH3P22223 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.55■■□□□ 1.04
CDH3P22223 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.55■■□□□ 1.04
CDH3P22223 AL031432.3-201ENST00000607698 485 ntBASIC21.55■■□□□ 1.04
CDH3P22223 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.55■■□□□ 1.04
CDH3P22223 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CDH3P22223 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDH3P22223 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CDH3P22223 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CDH3P22223 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CDH3P22223 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC21.54■■□□□ 1.04
CDH3P22223 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
CDH3P22223 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.53■■□□□ 1.04
CDH3P22223 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC21.53■■□□□ 1.04
CDH3P22223 SUDS3P1-201ENST00000505831 966 ntBASIC21.53■■□□□ 1.04
CDH3P22223 AF213884.3-201ENST00000563833 479 ntBASIC21.53■■□□□ 1.04
CDH3P22223 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.53■■□□□ 1.04
CDH3P22223 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.53■■□□□ 1.04
CDH3P22223 AC144652.1-201ENST00000609974 1624 ntBASIC21.53■■□□□ 1.04
CDH3P22223 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.53■■□□□ 1.04
CDH3P22223 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CDH3P22223 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CDH3P22223 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 FP325331.1-202ENST00000623531 1380 ntBASIC21.52■■□□□ 1.04
CDH3P22223 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
CDH3P22223 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CDH3P22223 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.52■■□□□ 1.04
CDH3P22223 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.52■■□□□ 1.04
CDH3P22223 AC136469.2-201ENST00000623944 1028 ntBASIC21.52■■□□□ 1.04
CDH3P22223 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.52■■□□□ 1.04
CDH3P22223 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CDH3P22223 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDH3P22223 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.03
CDH3P22223 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
CDH3P22223 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.51■■□□□ 1.03
CDH3P22223 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.51■■□□□ 1.03
CDH3P22223 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.51■■□□□ 1.03
CDH3P22223 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH3P22223 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH3P22223 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH3P22223 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.51■■□□□ 1.03
CDH3P22223 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
CDH3P22223 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDH3P22223 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.5■■□□□ 1.03
CDH3P22223 AP001330.3-201ENST00000520123 633 ntBASIC21.5■■□□□ 1.03
CDH3P22223 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
CDH3P22223 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDH3P22223 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.49■■□□□ 1.03
CDH3P22223 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.49■■□□□ 1.03
CDH3P22223 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.49■■□□□ 1.03
CDH3P22223 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDH3P22223 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
CDH3P22223 LINC01529-204ENST00000636474 1715 ntBASIC21.49■■□□□ 1.03
CDH3P22223 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CDH3P22223 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
CDH3P22223 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.48■■□□□ 1.03
CDH3P22223 MIR939-201ENST00000401314 82 ntBASIC21.48■■□□□ 1.03
CDH3P22223 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.48■■□□□ 1.03
CDH3P22223 DUX4L4-201ENST00000566884 1269 ntBASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms