Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CPSF4O95639 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CPSF4O95639 AC005703.6-201ENST00000623265 1329 ntBASIC21.04■□□□□ 0.96
CPSF4O95639 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.03■□□□□ 0.96
CPSF4O95639 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CPSF4O95639 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.03■□□□□ 0.96
CPSF4O95639 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CPSF4O95639 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.02■□□□□ 0.96
CPSF4O95639 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CPSF4O95639 AC021242.3-201ENST00000607598 1377 ntBASIC21.02■□□□□ 0.96
CPSF4O95639 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
CPSF4O95639 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.02■□□□□ 0.96
CPSF4O95639 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CPSF4O95639 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CPSF4O95639 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.95
CPSF4O95639 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CPSF4O95639 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.01■□□□□ 0.95
CPSF4O95639 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CPSF4O95639 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CPSF4O95639 MIR6722-201ENST00000617286 78 ntBASIC21.01■□□□□ 0.95
CPSF4O95639 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.01■□□□□ 0.95
CPSF4O95639 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CPSF4O95639 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CPSF4O95639 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21■□□□□ 0.95
CPSF4O95639 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21■□□□□ 0.95
CPSF4O95639 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CPSF4O95639 AC242852.2-201ENST00000615738 1807 ntBASIC21■□□□□ 0.95
CPSF4O95639 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21■□□□□ 0.95
CPSF4O95639 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21■□□□□ 0.95
CPSF4O95639 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21■□□□□ 0.95
CPSF4O95639 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CPSF4O95639 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21■□□□□ 0.95
CPSF4O95639 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21■□□□□ 0.95
CPSF4O95639 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CPSF4O95639 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CPSF4O95639 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CPSF4O95639 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.99■□□□□ 0.95
CPSF4O95639 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CPSF4O95639 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.99■□□□□ 0.95
CPSF4O95639 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CPSF4O95639 CLDN5-201ENST00000403084 2357 ntBASIC20.99■□□□□ 0.95
CPSF4O95639 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 AC127496.7-201ENST00000625110 1798 ntBASIC20.98■□□□□ 0.95
CPSF4O95639 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.98■□□□□ 0.95
CPSF4O95639 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.98■□□□□ 0.95
CPSF4O95639 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.98■□□□□ 0.95
CPSF4O95639 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.98■□□□□ 0.95
CPSF4O95639 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CPSF4O95639 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.98■□□□□ 0.95
CPSF4O95639 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CPSF4O95639 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.97■□□□□ 0.95
CPSF4O95639 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.97■□□□□ 0.95
CPSF4O95639 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.96■□□□□ 0.95
CPSF4O95639 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CPSF4O95639 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CPSF4O95639 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.96■□□□□ 0.95
CPSF4O95639 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CPSF4O95639 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms