Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SIX3O95343 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX3O95343 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX3O95343 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX3O95343 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SIX3O95343 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SIX3O95343 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX3O95343 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
SIX3O95343 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX3O95343 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
SIX3O95343 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.64■■□□□ 1.06
SIX3O95343 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SIX3O95343 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SIX3O95343 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SIX3O95343 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SIX3O95343 AC087742.1-201ENST00000575880 1738 ntBASIC21.64■■□□□ 1.06
SIX3O95343 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX3O95343 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX3O95343 CLDN5-201ENST00000403084 2357 ntBASIC21.64■■□□□ 1.05
SIX3O95343 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX3O95343 AC009299.2-201ENST00000482477 511 ntBASIC21.64■■□□□ 1.05
SIX3O95343 MTDHP2-201ENST00000601468 714 ntBASIC21.64■■□□□ 1.05
SIX3O95343 AL451085.2-201ENST00000605085 799 ntBASIC21.64■■□□□ 1.05
SIX3O95343 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.64■■□□□ 1.05
SIX3O95343 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SIX3O95343 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.64■■□□□ 1.05
SIX3O95343 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SIX3O95343 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
SIX3O95343 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SIX3O95343 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.63■■□□□ 1.05
SIX3O95343 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.63■■□□□ 1.05
SIX3O95343 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 AC080038.3-201ENST00000623346 1952 ntBASIC21.63■■□□□ 1.05
SIX3O95343 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SIX3O95343 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.62■■□□□ 1.05
SIX3O95343 AC009102.2-201ENST00000606772 1639 ntBASIC21.62■■□□□ 1.05
SIX3O95343 FP325331.1-202ENST00000623531 1380 ntBASIC21.62■■□□□ 1.05
SIX3O95343 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.62■■□□□ 1.05
SIX3O95343 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.62■■□□□ 1.05
SIX3O95343 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.62■■□□□ 1.05
SIX3O95343 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SIX3O95343 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SIX3O95343 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC21.61■■□□□ 1.05
SIX3O95343 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.61■■□□□ 1.05
SIX3O95343 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX3O95343 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
SIX3O95343 TSPY9P-201ENST00000440215 945 ntBASIC21.61■■□□□ 1.05
SIX3O95343 TSPY11P-201ENST00000442607 1045 ntBASIC21.61■■□□□ 1.05
SIX3O95343 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.61■■□□□ 1.05
SIX3O95343 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.61■■□□□ 1.05
SIX3O95343 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX3O95343 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX3O95343 AC139530.1-201ENST00000575312 1977 ntBASIC21.61■■□□□ 1.05
SIX3O95343 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SIX3O95343 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SIX3O95343 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
SIX3O95343 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.6■■□□□ 1.05
SIX3O95343 AC010997.5-201ENST00000609182 354 ntBASIC21.6■■□□□ 1.05
SIX3O95343 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.6■■□□□ 1.05
SIX3O95343 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SIX3O95343 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
SIX3O95343 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
SIX3O95343 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX3O95343 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
SIX3O95343 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
SIX3O95343 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
SIX3O95343 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
SIX3O95343 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
SIX3O95343 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.59■■□□□ 1.05
SIX3O95343 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms