Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTN3O95197 MIR935-201ENST00000401179 91 ntBASIC23.35■■□□□ 1.33
RTN3O95197 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RTN3O95197 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.35■■□□□ 1.33
RTN3O95197 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.35■■□□□ 1.33
RTN3O95197 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC23.35■■□□□ 1.33
RTN3O95197 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTN3O95197 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTN3O95197 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
RTN3O95197 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.34■■□□□ 1.33
RTN3O95197 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTN3O95197 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC23.34■■□□□ 1.33
RTN3O95197 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
RTN3O95197 SLC47A1P1-202ENST00000449666 945 ntBASIC23.34■■□□□ 1.33
RTN3O95197 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
RTN3O95197 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTN3O95197 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTN3O95197 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
RTN3O95197 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
RTN3O95197 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
RTN3O95197 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTN3O95197 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
RTN3O95197 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTN3O95197 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
RTN3O95197 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
RTN3O95197 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.33■■□□□ 1.33
RTN3O95197 OR2I1P-207ENST00000453522 948 ntBASIC23.33■■□□□ 1.33
RTN3O95197 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.33■■□□□ 1.33
RTN3O95197 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.33■■□□□ 1.33
RTN3O95197 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.33■■□□□ 1.32
RTN3O95197 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
RTN3O95197 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.33■■□□□ 1.32
RTN3O95197 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC23.32■■□□□ 1.32
RTN3O95197 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.32■■□□□ 1.32
RTN3O95197 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
RTN3O95197 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
RTN3O95197 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 AC126544.1-201ENST00000580842 1059 ntBASIC23.32■■□□□ 1.32
RTN3O95197 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
RTN3O95197 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
RTN3O95197 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
RTN3O95197 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
RTN3O95197 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
RTN3O95197 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC23.31■■□□□ 1.32
RTN3O95197 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
RTN3O95197 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
RTN3O95197 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.31■■□□□ 1.32
RTN3O95197 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.31■■□□□ 1.32
RTN3O95197 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.31■■□□□ 1.32
RTN3O95197 AL353803.4-201ENST00000565882 1934 ntBASIC23.31■■□□□ 1.32
RTN3O95197 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC23.3■■□□□ 1.32
RTN3O95197 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.3■■□□□ 1.32
RTN3O95197 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.3■■□□□ 1.32
RTN3O95197 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
RTN3O95197 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTN3O95197 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
RTN3O95197 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTN3O95197 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTN3O95197 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
RTN3O95197 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
RTN3O95197 LGR4-203ENST00000480977 492 ntTSL 2 BASIC23.29■■□□□ 1.32
RTN3O95197 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RTN3O95197 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC23.28■■□□□ 1.32
RTN3O95197 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
RTN3O95197 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RTN3O95197 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.28■■□□□ 1.32
RTN3O95197 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
RTN3O95197 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.28■■□□□ 1.32
RTN3O95197 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
RTN3O95197 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
RTN3O95197 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RTN3O95197 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
RTN3O95197 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.27■■□□□ 1.32
RTN3O95197 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.27■■□□□ 1.32
RTN3O95197 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC23.27■■□□□ 1.32
RTN3O95197 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.27■■□□□ 1.32
RTN3O95197 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.27■■□□□ 1.32
RTN3O95197 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
RTN3O95197 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTN3O95197 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
RTN3O95197 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
RTN3O95197 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
RTN3O95197 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
RTN3O95197 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
RTN3O95197 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTN3O95197 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
RTN3O95197 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTN3O95197 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.26■■□□□ 1.31
RTN3O95197 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
RTN3O95197 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.25■■□□□ 1.31
RTN3O95197 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.25■■□□□ 1.31
RTN3O95197 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
RTN3O95197 IRS3P-201ENST00000223076 1006 ntBASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms