Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AC131009.2-201ENST00000542763 770 ntTSL 3 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 LINC00563-201ENST00000566370 1400 ntBASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 MIR5001-201ENST00000580185 100 ntBASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 AL451007.2-201ENST00000632004 563 ntBASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ZSCAN29-207ENST00000568898 1389 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 ANKRA2-201ENST00000296785 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SHROOM3Q8TF72 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 THSD1-201ENST00000258613 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AP000229.1-201ENST00000608591 1979 ntTSL 4 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 TMEM30A-203ENST00000475111 2791 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 KRT18P4-201ENST00000422599 1288 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC093826.1-201ENST00000508655 993 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 F11R-204ENST00000537746 1245 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 PEBP1P2-201ENST00000603980 558 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SCN8A-215ENST00000638820 3359 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 STRADA-204ENST00000392950 2778 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AL929302.1-201ENST00000426556 871 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 GALP-202ENST00000440823 889 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 RPL35P9-201ENST00000446059 350 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AC005274.1-201ENST00000623460 802 ntBASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 SRSF5-201ENST00000394366 1638 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SHROOM3Q8TF72 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
SHROOM3Q8TF72 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms