Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NAV2-204ENST00000396087 7882 ntTSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 DUT-208ENST00000559540 1441 ntTSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 LDLRAD3-202ENST00000524419 1996 ntTSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 FMNL1-202ENST00000331495 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 HERC2P9-206ENST00000529624 5187 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 NBN-203ENST00000409330 4523 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 UMPS-201ENST00000232607 6738 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CEP170-203ENST00000366543 6727 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC099489.1-203ENST00000598234 10568 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 RNF115-202ENST00000582693 9117 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC007614.5-201ENST00000623424 8892 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 SH3RF2-206ENST00000511217 5607 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC004522.1-201ENST00000419978 654 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC092580.1-201ENST00000433998 658 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 HNRNPA1P36-201ENST00000521313 955 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 MIR5196-201ENST00000578146 115 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 RPL17P45-201ENST00000586289 509 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC007718.1-201ENST00000621078 280 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CSPG4P13-202ENST00000567704 4801 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 ZNF473-205ENST00000595661 4828 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 GREB1-201ENST00000234142 8444 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC008620.2-201ENST00000510294 1569 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CYP4F23P-201ENST00000593402 1579 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AGGF1P10-201ENST00000635005 2191 ntBASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 LUZP1-201ENST00000302291 8898 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CACNA1F-201ENST00000323022 6037 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.6
PDLIM3Q53GG5 CARD14-209ENST00000573882 4537 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 ARHGAP20-202ENST00000524756 6180 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 AL139158.3-201ENST00000641212 1562 ntBASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 LINC01815-202ENST00000641468 1409 ntBASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
PDLIM3Q53GG5 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms