Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RIOK3-203ENST00000577501 1904 ntAPPRIS ALT1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RFC3P40938 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
RFC3P40938 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
RFC3P40938 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RFC3P40938 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
RFC3P40938 PTGER4P2-201ENST00000328411 252 ntBASIC12.4□□□□□ -0.42
RFC3P40938 RNA5SP491-201ENST00000362936 118 ntBASIC12.4□□□□□ -0.42
RFC3P40938 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 RPL10-203ENST00000406022 748 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 AL139008.1-201ENST00000437894 228 ntBASIC12.4□□□□□ -0.42
RFC3P40938 AC005077.3-201ENST00000449614 213 ntBASIC12.4□□□□□ -0.42
RFC3P40938 NALT1-202ENST00000450304 437 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 PTGER4P3-201ENST00000458150 252 ntBASIC12.4□□□□□ -0.42
RFC3P40938 RN7SL147P-201ENST00000487345 298 ntBASIC12.4□□□□□ -0.42
RFC3P40938 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 HNRNPA1P5-201ENST00000558213 966 ntBASIC12.4□□□□□ -0.42
RFC3P40938 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 KF455155.1-201ENST00000604493 303 ntBASIC12.4□□□□□ -0.42
RFC3P40938 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC12.4□□□□□ -0.42
RFC3P40938 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC12.4□□□□□ -0.42
RFC3P40938 AC005274.1-201ENST00000623460 802 ntBASIC12.4□□□□□ -0.42
RFC3P40938 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC12.4□□□□□ -0.42
RFC3P40938 AP000769.1-203ENST00000637245 208 ntBASIC12.4□□□□□ -0.42
RFC3P40938 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
RFC3P40938 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
RFC3P40938 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.4□□□□□ -0.42
RFC3P40938 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RFC3P40938 POM121L4P-202ENST00000427789 1891 ntBASIC12.4□□□□□ -0.42
RFC3P40938 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.43
RFC3P40938 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
RFC3P40938 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
RFC3P40938 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC12.4□□□□□ -0.43
RFC3P40938 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
RFC3P40938 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.39□□□□□ -0.43
RFC3P40938 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 AC023794.5-201ENST00000564380 2157 ntBASIC12.39□□□□□ -0.43
RFC3P40938 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RFC3P40938 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RFC3P40938 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RFC3P40938 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RFC3P40938 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
RFC3P40938 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC12.39□□□□□ -0.43
RFC3P40938 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms