Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ABCD1P4-201ENST00000399687 604 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 LINP1-201ENST00000417112 917 ntTSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 RPL18AP16-201ENST00000424057 531 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 HNRNPA1P10-201ENST00000444945 962 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 MT3-202ENST00000561640 514 ntTSL 3 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 CDC37P2-201ENST00000562287 1029 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 IFNL3P1-201ENST00000595082 501 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 AC026336.4-201ENST00000624565 1050 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 LINC00115-201ENST00000473798 1317 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 KRT8P18-201ENST00000413425 1445 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 RBFOX1-214ENST00000552089 1430 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC020658.7-201ENST00000624274 2442 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AL118506.1-201ENST00000601296 3082 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 THAP4-203ENST00000402545 833 ntTSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 TUBB2BP1-201ENST00000404155 871 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 IFITM1-202ENST00000408968 855 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AL136084.1-201ENST00000449172 318 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 TBC1D3P6-201ENST00000505954 962 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC005740.1-201ENST00000515639 522 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ABCC6P2-201ENST00000526069 590 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AP003040.1-201ENST00000532044 1024 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC009041.4-201ENST00000620075 638 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AC073548.1-201ENST00000624088 1882 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 AL121753.2-201ENST00000624581 1461 ntBASIC13.03□□□□□ -0.32
COL28A1Q2UY09 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL28A1Q2UY09 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms