Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC15.93■□□□□ 0.14
HMGB1P09429 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 TNRC18P1-201ENST00000502875 3650 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 RPE-208ENST00000436630 1128 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 TMCO5B-205ENST00000530020 894 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 IQSEC3P1-201ENST00000538799 536 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 CES1P2-201ENST00000566467 1242 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.93■□□□□ 0.14
HMGB1P09429 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC15.93■□□□□ 0.14
HMGB1P09429 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 SERPING1-203ENST00000378323 1733 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 UBA52-202ENST00000442744 2845 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 AC139491.6-202ENST00000637171 2077 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC15.93■□□□□ 0.14
HMGB1P09429 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 ANKRD20A7P-201ENST00000402318 2414 ntBASIC15.93■□□□□ 0.14
HMGB1P09429 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
HMGB1P09429 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
HMGB1P09429 AC135506.1-201ENST00000603877 1799 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
HMGB1P09429 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 AL365181.1-201ENST00000564032 1828 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 RPL10-203ENST00000406022 748 ntTSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.92■□□□□ 0.14
HMGB1P09429 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 AC078991.1-201ENST00000437297 610 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 HINT1-204ENST00000506908 681 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC15.92■□□□□ 0.14
HMGB1P09429 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC15.92■□□□□ 0.14
HMGB1P09429 AP000553.2-201ENST00000609038 441 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 AC107464.3-201ENST00000609172 737 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 YRDCP1-201ENST00000621419 643 ntBASIC15.92■□□□□ 0.14
HMGB1P09429 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 C1R-209ENST00000542285 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 NUP85-201ENST00000245544 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC15.92■□□□□ 0.14
HMGB1P09429 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
HMGB1P09429 DMBX1-201ENST00000360032 2880 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC15.92■□□□□ 0.14
HMGB1P09429 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
HMGB1P09429 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
HMGB1P09429 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 ZSCAN5DP-201ENST00000600684 1488 ntBASIC15.91■□□□□ 0.14
HMGB1P09429 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
HMGB1P09429 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
HMGB1P09429 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
HMGB1P09429 FSTL1-202ENST00000424703 1396 ntTSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC15.91■□□□□ 0.14
HMGB1P09429 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms