Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CHD8Q9HCK8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHD8Q9HCK8 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CHD8Q9HCK8 UNC93B4-201ENST00000505679 747 ntBASIC21.1■□□□□ 0.97
CHD8Q9HCK8 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHD8Q9HCK8 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHD8Q9HCK8 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHD8Q9HCK8 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 AC073912.3-201ENST00000624414 853 ntBASIC21.08■□□□□ 0.97
CHD8Q9HCK8 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CHD8Q9HCK8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
CHD8Q9HCK8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.08■□□□□ 0.96
CHD8Q9HCK8 CNN2P6-201ENST00000439038 900 ntBASIC21.08■□□□□ 0.96
CHD8Q9HCK8 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
CHD8Q9HCK8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.07■□□□□ 0.96
CHD8Q9HCK8 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.07■□□□□ 0.96
CHD8Q9HCK8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 ESRRAP1-201ENST00000400596 1257 ntBASIC21.06■□□□□ 0.96
CHD8Q9HCK8 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CHD8Q9HCK8 AC097639.1-201ENST00000565519 1891 ntBASIC21.06■□□□□ 0.96
CHD8Q9HCK8 AC096887.2-201ENST00000623443 1957 ntBASIC21.06■□□□□ 0.96
CHD8Q9HCK8 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 AC133552.2-202ENST00000575694 574 ntBASIC21.05■□□□□ 0.96
CHD8Q9HCK8 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 UBE2DNL-204ENST00000602536 740 ntBASIC21.05■□□□□ 0.96
CHD8Q9HCK8 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHD8Q9HCK8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC142381.4-202ENST00000563973 229 ntBASIC21.04■□□□□ 0.96
CHD8Q9HCK8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC128676.1-201ENST00000454392 318 ntBASIC21.04■□□□□ 0.96
CHD8Q9HCK8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC083880.1-201ENST00000608266 535 ntBASIC21.04■□□□□ 0.96
CHD8Q9HCK8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 AC231657.2-201ENST00000624556 255 ntBASIC21.04■□□□□ 0.96
CHD8Q9HCK8 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHD8Q9HCK8 BX005040.4-201ENST00000637145 1518 ntBASIC21.03■□□□□ 0.96
CHD8Q9HCK8 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHD8Q9HCK8 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms