Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
USP42Q9H9J4 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
USP42Q9H9J4 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.49■■■□□ 2.15
USP42Q9H9J4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
USP42Q9H9J4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
USP42Q9H9J4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC28.48■■■□□ 2.15
USP42Q9H9J4 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC28.48■■■□□ 2.15
USP42Q9H9J4 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
USP42Q9H9J4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC28.47■■■□□ 2.15
USP42Q9H9J4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP42Q9H9J4 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP42Q9H9J4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP42Q9H9J4 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.47■■■□□ 2.15
USP42Q9H9J4 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
USP42Q9H9J4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC28.47■■■□□ 2.15
USP42Q9H9J4 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
USP42Q9H9J4 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC28.47■■■□□ 2.15
USP42Q9H9J4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC28.47■■■□□ 2.15
USP42Q9H9J4 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP42Q9H9J4 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP42Q9H9J4 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC28.46■■■□□ 2.15
USP42Q9H9J4 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.46■■■□□ 2.15
USP42Q9H9J4 HLA-L-209ENST00000420110 1011 ntBASIC28.46■■■□□ 2.15
USP42Q9H9J4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
USP42Q9H9J4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC28.46■■■□□ 2.15
USP42Q9H9J4 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
USP42Q9H9J4 LINC00543-201ENST00000567234 1845 ntBASIC28.46■■■□□ 2.15
USP42Q9H9J4 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP42Q9H9J4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC28.46■■■□□ 2.15
USP42Q9H9J4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
USP42Q9H9J4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC28.45■■■□□ 2.15
USP42Q9H9J4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.45■■■□□ 2.15
USP42Q9H9J4 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
USP42Q9H9J4 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
USP42Q9H9J4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC28.45■■■□□ 2.15
USP42Q9H9J4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
USP42Q9H9J4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC28.45■■■□□ 2.14
USP42Q9H9J4 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
USP42Q9H9J4 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP42Q9H9J4 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP42Q9H9J4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC28.44■■■□□ 2.14
USP42Q9H9J4 KRT18P61-201ENST00000585825 1298 ntBASIC28.44■■■□□ 2.14
USP42Q9H9J4 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
USP42Q9H9J4 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.44■■■□□ 2.14
USP42Q9H9J4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC28.44■■■□□ 2.14
USP42Q9H9J4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP42Q9H9J4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
USP42Q9H9J4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.43■■■□□ 2.14
USP42Q9H9J4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC28.43■■■□□ 2.14
USP42Q9H9J4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 LINC01124-201ENST00000409786 2117 ntBASIC28.43■■■□□ 2.14
USP42Q9H9J4 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC28.43■■■□□ 2.14
USP42Q9H9J4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
USP42Q9H9J4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC28.43■■■□□ 2.14
USP42Q9H9J4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC28.42■■■□□ 2.14
USP42Q9H9J4 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP42Q9H9J4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC28.42■■■□□ 2.14
USP42Q9H9J4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC28.42■■■□□ 2.14
USP42Q9H9J4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
USP42Q9H9J4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
USP42Q9H9J4 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP42Q9H9J4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP42Q9H9J4 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP42Q9H9J4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
USP42Q9H9J4 AC093323.1-202ENST00000635031 2045 ntBASIC28.41■■■□□ 2.14
USP42Q9H9J4 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.41■■■□□ 2.14
USP42Q9H9J4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.41■■■□□ 2.14
USP42Q9H9J4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
USP42Q9H9J4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP42Q9H9J4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
USP42Q9H9J4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC28.4■■■□□ 2.14
USP42Q9H9J4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP42Q9H9J4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USP42Q9H9J4 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
USP42Q9H9J4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
USP42Q9H9J4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
USP42Q9H9J4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.3 ms