Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SPENQ96T58 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SPENQ96T58 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.29■□□□□ 0.84
SPENQ96T58 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.29■□□□□ 0.84
SPENQ96T58 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.29■□□□□ 0.84
SPENQ96T58 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SPENQ96T58 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SPENQ96T58 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SPENQ96T58 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SPENQ96T58 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SPENQ96T58 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SPENQ96T58 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SPENQ96T58 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SPENQ96T58 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.28■□□□□ 0.84
SPENQ96T58 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SPENQ96T58 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.27■□□□□ 0.84
SPENQ96T58 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SPENQ96T58 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.27■□□□□ 0.84
SPENQ96T58 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SPENQ96T58 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 AL355802.2-201ENST00000402069 882 ntBASIC20.27■□□□□ 0.84
SPENQ96T58 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.27■□□□□ 0.84
SPENQ96T58 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SPENQ96T58 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC20.27■□□□□ 0.84
SPENQ96T58 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.27■□□□□ 0.83
SPENQ96T58 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
SPENQ96T58 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.26■□□□□ 0.83
SPENQ96T58 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.26■□□□□ 0.83
SPENQ96T58 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SPENQ96T58 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.26■□□□□ 0.83
SPENQ96T58 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.26■□□□□ 0.83
SPENQ96T58 AC091060.1-201ENST00000623524 1766 ntBASIC20.26■□□□□ 0.83
SPENQ96T58 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SPENQ96T58 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SPENQ96T58 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 AC080038.1-201ENST00000611274 1154 ntBASIC20.25■□□□□ 0.83
SPENQ96T58 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.25■□□□□ 0.83
SPENQ96T58 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
SPENQ96T58 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.25■□□□□ 0.83
SPENQ96T58 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.25■□□□□ 0.83
SPENQ96T58 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SPENQ96T58 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.25■□□□□ 0.83
SPENQ96T58 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.25■□□□□ 0.83
SPENQ96T58 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.24■□□□□ 0.83
SPENQ96T58 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.24■□□□□ 0.83
SPENQ96T58 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.24■□□□□ 0.83
SPENQ96T58 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SPENQ96T58 AL499627.2-201ENST00000606283 725 ntBASIC20.24■□□□□ 0.83
SPENQ96T58 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SPENQ96T58 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 AC004854.2-201ENST00000608450 1441 ntBASIC20.24■□□□□ 0.83
SPENQ96T58 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
SPENQ96T58 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SPENQ96T58 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 MIR663A-201ENST00000385250 93 ntBASIC20.24■□□□□ 0.83
SPENQ96T58 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SPENQ96T58 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SPENQ96T58 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.23■□□□□ 0.83
SPENQ96T58 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.23■□□□□ 0.83
SPENQ96T58 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.23■□□□□ 0.83
SPENQ96T58 KRT18P6-201ENST00000555540 1265 ntBASIC20.23■□□□□ 0.83
SPENQ96T58 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
SPENQ96T58 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SPENQ96T58 ALDH1A3-203ENST00000557963 1670 ntBASIC20.22■□□□□ 0.83
SPENQ96T58 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.22■□□□□ 0.83
SPENQ96T58 AC066615.1-201ENST00000640911 628 ntBASIC20.22■□□□□ 0.83
SPENQ96T58 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SPENQ96T58 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SPENQ96T58 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms