Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
USP47Q96K76 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP47Q96K76 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.33■■■□□ 2.61
USP47Q96K76 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC31.33■■■□□ 2.61
USP47Q96K76 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP47Q96K76 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC31.33■■■□□ 2.61
USP47Q96K76 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC31.33■■■□□ 2.61
USP47Q96K76 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP47Q96K76 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
USP47Q96K76 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
USP47Q96K76 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC31.33■■■□□ 2.61
USP47Q96K76 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC31.33■■■□□ 2.61
USP47Q96K76 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC31.33■■■□□ 2.61
USP47Q96K76 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC31.32■■■□□ 2.61
USP47Q96K76 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
USP47Q96K76 PBX2P1-201ENST00000493219 1291 ntBASIC31.32■■■□□ 2.6
USP47Q96K76 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC31.32■■■□□ 2.6
USP47Q96K76 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP47Q96K76 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP47Q96K76 CASK-201ENST00000378154 2494 ntTSL 5 BASIC31.32■■■□□ 2.6
USP47Q96K76 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP47Q96K76 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
USP47Q96K76 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC31.31■■■□□ 2.6
USP47Q96K76 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
USP47Q96K76 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
USP47Q96K76 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
USP47Q96K76 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC31.31■■■□□ 2.6
USP47Q96K76 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP47Q96K76 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP47Q96K76 DUSP8P5-201ENST00000422884 1815 ntBASIC31.3■■■□□ 2.6
USP47Q96K76 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC31.3■■■□□ 2.6
USP47Q96K76 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC31.3■■■□□ 2.6
USP47Q96K76 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USP47Q96K76 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC31.3■■■□□ 2.6
USP47Q96K76 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC31.3■■■□□ 2.6
USP47Q96K76 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP47Q96K76 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP47Q96K76 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC31.29■■■□□ 2.6
USP47Q96K76 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC31.29■■■□□ 2.6
USP47Q96K76 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC31.29■■■□□ 2.6
USP47Q96K76 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
USP47Q96K76 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP47Q96K76 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
USP47Q96K76 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
USP47Q96K76 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USP47Q96K76 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC31.28■■■□□ 2.6
USP47Q96K76 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC31.28■■■□□ 2.6
USP47Q96K76 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC31.28■■■□□ 2.6
USP47Q96K76 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
USP47Q96K76 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
USP47Q96K76 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP47Q96K76 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP47Q96K76 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP47Q96K76 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC31.27■■■□□ 2.6
USP47Q96K76 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP47Q96K76 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USP47Q96K76 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC31.27■■■□□ 2.6
USP47Q96K76 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.6
USP47Q96K76 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
USP47Q96K76 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
USP47Q96K76 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC31.26■■■□□ 2.59
USP47Q96K76 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.26■■■□□ 2.59
USP47Q96K76 AP001330.3-201ENST00000520123 633 ntBASIC31.26■■■□□ 2.59
USP47Q96K76 AC133561.4-201ENST00000566112 224 ntBASIC31.26■■■□□ 2.59
USP47Q96K76 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC31.26■■■□□ 2.59
USP47Q96K76 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC31.26■■■□□ 2.59
USP47Q96K76 AC004687.1-201ENST00000579003 1625 ntBASIC31.26■■■□□ 2.59
USP47Q96K76 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC31.25■■■□□ 2.59
USP47Q96K76 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP47Q96K76 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
USP47Q96K76 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC31.25■■■□□ 2.59
USP47Q96K76 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
USP47Q96K76 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP47Q96K76 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP47Q96K76 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
USP47Q96K76 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC31.23■■■□□ 2.59
USP47Q96K76 EDA-201ENST00000338901 1233 ntBASIC31.23■■■□□ 2.59
USP47Q96K76 SLC47A1P1-202ENST00000449666 945 ntBASIC31.23■■■□□ 2.59
USP47Q96K76 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
USP47Q96K76 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP47Q96K76 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
USP47Q96K76 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
USP47Q96K76 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
USP47Q96K76 OR2I1P-207ENST00000453522 948 ntBASIC31.22■■■□□ 2.59
USP47Q96K76 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
USP47Q96K76 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC31.22■■■□□ 2.59
USP47Q96K76 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP47Q96K76 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
USP47Q96K76 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
USP47Q96K76 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC31.21■■■□□ 2.59
USP47Q96K76 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
USP47Q96K76 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
USP47Q96K76 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC31.21■■■□□ 2.59
USP47Q96K76 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.59
USP47Q96K76 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
USP47Q96K76 SUDS3P1-201ENST00000505831 966 ntBASIC31.2■■■□□ 2.59
USP47Q96K76 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
USP47Q96K76 AC010525.1-201ENST00000585559 441 ntBASIC31.2■■■□□ 2.59
USP47Q96K76 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC31.2■■■□□ 2.59
USP47Q96K76 GRAMD4P4-201ENST00000613563 1115 ntBASIC31.2■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms