Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LMX1AQ8TE12 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 AC027612.3-201ENST00000413684 1047 ntBASIC21.74■■□□□ 1.07
LMX1AQ8TE12 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 AL354811.1-201ENST00000610286 706 ntBASIC21.74■■□□□ 1.07
LMX1AQ8TE12 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LMX1AQ8TE12 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
LMX1AQ8TE12 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 AP005435.1-201ENST00000529293 1178 ntBASIC21.72■■□□□ 1.07
LMX1AQ8TE12 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LMX1AQ8TE12 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 AC123595.1-201ENST00000440769 1046 ntBASIC21.71■■□□□ 1.07
LMX1AQ8TE12 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 AC004812.2-201ENST00000611079 2094 ntBASIC21.71■■□□□ 1.07
LMX1AQ8TE12 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LMX1AQ8TE12 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 KRT18P5-201ENST00000436075 1291 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L2-201ENST00000561772 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L6-201ENST00000626483 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L1-201ENST00000627662 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L8-201ENST00000629013 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L3-201ENST00000630187 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L7-201ENST00000630678 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 DUX4L5-201ENST00000630834 1275 ntBASIC21.7■■□□□ 1.06
LMX1AQ8TE12 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.7■■□□□ 1.06
LMX1AQ8TE12 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms