Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LINC00643Q86TS7 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC00643Q86TS7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
LINC00643Q86TS7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC00643Q86TS7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC00643Q86TS7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
LINC00643Q86TS7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
LINC00643Q86TS7 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.18
LINC00643Q86TS7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00643Q86TS7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00643Q86TS7 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms