Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC009102.2-201ENST00000606772 1639 ntBASIC21.73■■□□□ 1.07
PTCHD3Q3KNS1 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 AC012676.1-201ENST00000574705 1949 ntBASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTCHD3Q3KNS1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD3Q3KNS1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD3Q3KNS1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PTCHD3Q3KNS1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.71■■□□□ 1.07
PTCHD3Q3KNS1 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.71■■□□□ 1.07
PTCHD3Q3KNS1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PTCHD3Q3KNS1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PTCHD3Q3KNS1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 SRD5A1P1-201ENST00000442297 786 ntBASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
PTCHD3Q3KNS1 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 LINC01529-204ENST00000636474 1715 ntBASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
PTCHD3Q3KNS1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 FP325331.1-202ENST00000623531 1380 ntBASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
PTCHD3Q3KNS1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 C1orf229-201ENST00000623686 2258 ntBASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 C17orf82-201ENST00000623772 1530 ntBASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.65■■□□□ 1.06
PTCHD3Q3KNS1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.64■■□□□ 1.06
PTCHD3Q3KNS1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.64■■□□□ 1.06
PTCHD3Q3KNS1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD3Q3KNS1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD3Q3KNS1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PTCHD3Q3KNS1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
PTCHD3Q3KNS1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.64■■□□□ 1.05
PTCHD3Q3KNS1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PTCHD3Q3KNS1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
PTCHD3Q3KNS1 UNC93B3-201ENST00000308076 687 ntBASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms