Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKDCP78527 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
PRKDCP78527 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKDCP78527 UBE2DNL-204ENST00000602536 740 ntBASIC16.41■□□□□ 0.22
PRKDCP78527 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKDCP78527 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PRKDCP78527 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKDCP78527 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.41■□□□□ 0.22
PRKDCP78527 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PRKDCP78527 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PRKDCP78527 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKDCP78527 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.41■□□□□ 0.22
PRKDCP78527 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
PRKDCP78527 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
PRKDCP78527 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.4■□□□□ 0.22
PRKDCP78527 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PRKDCP78527 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PRKDCP78527 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
PRKDCP78527 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.4■□□□□ 0.22
PRKDCP78527 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.4■□□□□ 0.22
PRKDCP78527 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.4■□□□□ 0.22
PRKDCP78527 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
PRKDCP78527 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
PRKDCP78527 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC16.4■□□□□ 0.22
PRKDCP78527 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.4■□□□□ 0.22
PRKDCP78527 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PRKDCP78527 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.4■□□□□ 0.22
PRKDCP78527 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC16.4■□□□□ 0.22
PRKDCP78527 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC16.39■□□□□ 0.21
PRKDCP78527 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PRKDCP78527 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
PRKDCP78527 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PRKDCP78527 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.39■□□□□ 0.21
PRKDCP78527 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.39■□□□□ 0.21
PRKDCP78527 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
PRKDCP78527 AC097639.1-201ENST00000565519 1891 ntBASIC16.39■□□□□ 0.21
PRKDCP78527 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
PRKDCP78527 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
PRKDCP78527 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.39■□□□□ 0.21
PRKDCP78527 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
PRKDCP78527 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
PRKDCP78527 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC16.39■□□□□ 0.21
PRKDCP78527 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.39■□□□□ 0.21
PRKDCP78527 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.39■□□□□ 0.21
PRKDCP78527 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
PRKDCP78527 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.38■□□□□ 0.21
PRKDCP78527 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.38■□□□□ 0.21
PRKDCP78527 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.38■□□□□ 0.21
PRKDCP78527 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.38■□□□□ 0.21
PRKDCP78527 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC16.38■□□□□ 0.21
PRKDCP78527 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
PRKDCP78527 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.38■□□□□ 0.21
PRKDCP78527 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC16.38■□□□□ 0.21
PRKDCP78527 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
PRKDCP78527 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.38■□□□□ 0.21
PRKDCP78527 AC231657.2-201ENST00000624556 255 ntBASIC16.38■□□□□ 0.21
PRKDCP78527 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
PRKDCP78527 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PRKDCP78527 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PRKDCP78527 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.38■□□□□ 0.21
PRKDCP78527 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.38■□□□□ 0.21
PRKDCP78527 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PRKDCP78527 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PRKDCP78527 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.37■□□□□ 0.21
PRKDCP78527 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC16.37■□□□□ 0.21
PRKDCP78527 AF201337.1-201ENST00000520239 748 ntBASIC16.37■□□□□ 0.21
PRKDCP78527 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.37■□□□□ 0.21
PRKDCP78527 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PRKDCP78527 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.37■□□□□ 0.21
PRKDCP78527 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.37■□□□□ 0.21
PRKDCP78527 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.37■□□□□ 0.21
PRKDCP78527 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PRKDCP78527 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PRKDCP78527 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.36■□□□□ 0.21
PRKDCP78527 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
PRKDCP78527 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PRKDCP78527 SHF-208ENST00000560734 1731 ntTSL 3 BASIC16.35■□□□□ 0.21
PRKDCP78527 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PRKDCP78527 AC128676.1-201ENST00000454392 318 ntBASIC16.35■□□□□ 0.21
PRKDCP78527 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PRKDCP78527 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PRKDCP78527 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PRKDCP78527 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.35■□□□□ 0.21
PRKDCP78527 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PRKDCP78527 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PRKDCP78527 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms