Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RAE1P78406 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RAE1P78406 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.16■□□□□ 0.98
RAE1P78406 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.16■□□□□ 0.98
RAE1P78406 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RAE1P78406 ESRRAP2-201ENST00000418437 1549 ntBASIC21.16■□□□□ 0.98
RAE1P78406 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.16■□□□□ 0.98
RAE1P78406 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RAE1P78406 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RAE1P78406 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RAE1P78406 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAE1P78406 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RAE1P78406 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAE1P78406 C17orf82-201ENST00000623772 1530 ntBASIC21.15■□□□□ 0.98
RAE1P78406 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
RAE1P78406 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RAE1P78406 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.15■□□□□ 0.98
RAE1P78406 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC21.15■□□□□ 0.98
RAE1P78406 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.15■□□□□ 0.98
RAE1P78406 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RAE1P78406 MIR6724-1-201ENST00000616420 92 ntBASIC21.15■□□□□ 0.98
RAE1P78406 MIR6724-2-201ENST00000616483 92 ntBASIC21.15■□□□□ 0.98
RAE1P78406 MIR6724-4-201ENST00000617390 92 ntBASIC21.15■□□□□ 0.98
RAE1P78406 MIR6724-3-201ENST00000622482 92 ntBASIC21.15■□□□□ 0.98
RAE1P78406 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
RAE1P78406 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RAE1P78406 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
RAE1P78406 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.14■□□□□ 0.98
RAE1P78406 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RAE1P78406 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RAE1P78406 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
RAE1P78406 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RAE1P78406 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.14■□□□□ 0.97
RAE1P78406 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
RAE1P78406 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.14■□□□□ 0.97
RAE1P78406 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.14■□□□□ 0.97
RAE1P78406 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
RAE1P78406 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RAE1P78406 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
RAE1P78406 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RAE1P78406 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RAE1P78406 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
RAE1P78406 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RAE1P78406 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
RAE1P78406 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RAE1P78406 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAE1P78406 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.13■□□□□ 0.97
RAE1P78406 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAE1P78406 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAE1P78406 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RAE1P78406 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RAE1P78406 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.12■□□□□ 0.97
RAE1P78406 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.12■□□□□ 0.97
RAE1P78406 AC127496.7-201ENST00000625110 1798 ntBASIC21.12■□□□□ 0.97
RAE1P78406 AC087742.1-201ENST00000575880 1738 ntBASIC21.12■□□□□ 0.97
RAE1P78406 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.12■□□□□ 0.97
RAE1P78406 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RAE1P78406 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.11■□□□□ 0.97
RAE1P78406 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 GUSBP5-201ENST00000418136 578 ntBASIC21.11■□□□□ 0.97
RAE1P78406 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.11■□□□□ 0.97
RAE1P78406 ECEL1P1-201ENST00000373592 1742 ntBASIC21.11■□□□□ 0.97
RAE1P78406 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
RAE1P78406 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
RAE1P78406 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAE1P78406 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAE1P78406 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
RAE1P78406 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.1■□□□□ 0.97
RAE1P78406 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
RAE1P78406 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAE1P78406 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
RAE1P78406 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.1■□□□□ 0.97
RAE1P78406 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
RAE1P78406 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.1■□□□□ 0.97
RAE1P78406 KRT16P3-201ENST00000439127 1283 ntBASIC21.1■□□□□ 0.97
RAE1P78406 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.1■□□□□ 0.97
RAE1P78406 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RAE1P78406 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
RAE1P78406 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.1■□□□□ 0.97
RAE1P78406 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 LINC00526-201ENST00000581067 1875 ntBASIC21.09■□□□□ 0.97
RAE1P78406 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
RAE1P78406 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.09■□□□□ 0.97
RAE1P78406 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.09■□□□□ 0.97
RAE1P78406 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
RAE1P78406 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms