Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LSM3P62310 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
LSM3P62310 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LSM3P62310 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.02■□□□□ 0.79
LSM3P62310 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.01■□□□□ 0.79
LSM3P62310 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LSM3P62310 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
LSM3P62310 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
LSM3P62310 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LSM3P62310 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
LSM3P62310 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM3P62310 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
LSM3P62310 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LSM3P62310 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM3P62310 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20■□□□□ 0.79
LSM3P62310 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20■□□□□ 0.79
LSM3P62310 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM3P62310 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM3P62310 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.99■□□□□ 0.79
LSM3P62310 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.99■□□□□ 0.79
LSM3P62310 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.99■□□□□ 0.79
LSM3P62310 AC025884.2-201ENST00000553429 711 ntBASIC19.99■□□□□ 0.79
LSM3P62310 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.99■□□□□ 0.79
LSM3P62310 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM3P62310 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.99■□□□□ 0.79
LSM3P62310 FAM99A-202ENST00000538190 1989 ntBASIC19.99■□□□□ 0.79
LSM3P62310 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.99■□□□□ 0.79
LSM3P62310 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM3P62310 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM3P62310 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
LSM3P62310 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LSM3P62310 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
LSM3P62310 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
LSM3P62310 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.97■□□□□ 0.79
LSM3P62310 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
LSM3P62310 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LSM3P62310 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.97■□□□□ 0.79
LSM3P62310 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LSM3P62310 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LSM3P62310 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LSM3P62310 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
LSM3P62310 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
LSM3P62310 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.96■□□□□ 0.79
LSM3P62310 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.96■□□□□ 0.79
LSM3P62310 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LSM3P62310 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
LSM3P62310 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
LSM3P62310 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 AL157400.5-201ENST00000507624 621 ntBASIC19.95■□□□□ 0.78
LSM3P62310 DUX4L11-201ENST00000611504 1267 ntBASIC19.95■□□□□ 0.78
LSM3P62310 DUX4L12-201ENST00000614593 1267 ntBASIC19.95■□□□□ 0.78
LSM3P62310 DUX4L14-201ENST00000621227 1267 ntBASIC19.95■□□□□ 0.78
LSM3P62310 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.95■□□□□ 0.78
LSM3P62310 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
LSM3P62310 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LSM3P62310 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.95■□□□□ 0.78
LSM3P62310 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.95■□□□□ 0.78
LSM3P62310 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms