Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MADD-201ENST00000311027 5990 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.472e-6■■■■□ 20.2
YBX3P16989 FBXW7-207ENST00000603841 2261 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.482e-6■■■■□ 20.2
YBX3P16989 MADD-209ENST00000406482 5614 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.492e-6■■■■□ 20.2
YBX3P16989 MADD-204ENST00000395336 5942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.492e-6■■■■□ 20.2
YBX3P16989 MADD-206ENST00000402192 5823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.512e-6■■■■□ 20.2
YBX3P16989 MADD-210ENST00000407859 5744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.542e-6■■■■□ 20.2
YBX3P16989 UGP2-228ENST00000497883 605 ntTSL 311.44□□□□□ -0.582e-6■■■■□ 20.2
YBX3P16989 NSRP1-201ENST00000247026 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.592e-6■■■■□ 20.2
YBX3P16989 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.612e-6■■■■□ 20.2
YBX3P16989 UGP2-224ENST00000494536 581 ntTSL 210.38□□□□□ -0.752e-6■■■■□ 20.2
YBX3P16989 UGP2-220ENST00000487640 566 ntTSL 410.34□□□□□ -0.752e-6■■■■□ 20.2
YBX3P16989 MADD-205ENST00000395344 4988 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.762e-6■■■■□ 20.2
YBX3P16989 FBXW7-205ENST00000603548 2562 ntAPPRIS P4 TSL 1 (best) BASIC9.63□□□□□ -0.872e-6■■■■□ 20.2
YBX3P16989 NSRP1-217ENST00000612959 2420 ntTSL 1 (best) BASIC9.61□□□□□ -0.872e-6■■■■□ 20.2
YBX3P16989 UGP2-222ENST00000491621 753 ntTSL 37.87□□□□□ -1.152e-6■■■■□ 20.2
YBX3P16989 FBXW7-213ENST00000605042 671 ntTSL 37.79□□□□□ -1.162e-6■■■■□ 20.2
YBX3P16989 UGP2-209ENST00000472047 558 ntTSL 47.1□□□□□ -1.272e-6■■■■□ 20.2
YBX3P16989 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.64□□□□□ -1.352e-6■■■■□ 20.2
YBX3P16989 UGP2-231ENST00000627474 264 ntTSL 5 BASIC6.51□□□□□ -1.372e-6■■■■□ 20.2
YBX3P16989 UGP2-218ENST00000487042 889 ntTSL 55.96□□□□□ -1.462e-6■■■■□ 20.2
YBX3P16989 PSMA7-206ENST00000486193 548 ntTSL 25.32□□□□□ -1.562e-6■■■■□ 20.2
YBX3P16989 UGP2-210ENST00000475462 560 ntTSL 45.15□□□□□ -1.592e-6■■■■□ 20.2
YBX3P16989 UGP2-204ENST00000465515 668 ntTSL 24.45□□□□□ -1.72e-6■■■■□ 20.2
YBX3P16989 UGP2-230ENST00000626380 276 ntTSL 5 BASIC4.16□□□□□ -1.742e-6■■■■□ 20.2
YBX3P16989 ACAA2-205ENST00000587994 1657 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.153e-6■■■■□ 20.2
YBX3P16989 ACAA2-201ENST00000285093 3350 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.573e-6■■■■□ 20.2
YBX3P16989 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC10.61□□□□□ -0.713e-6■■■■□ 20.2
YBX3P16989 ACAA2-207ENST00000591171 1850 ntTSL 25.81□□□□□ -1.483e-6■■■■□ 20.2
YBX3P16989 HAX1-202ENST00000435087 822 ntTSL 316.87■□□□□ 0.297e-12■■■■□ 20.2
YBX3P16989 HAX1-206ENST00000471326 1170 ntTSL 213.14□□□□□ -0.317e-12■■■■□ 20.2
YBX3P16989 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.133e-6■■■■□ 20.2
YBX3P16989 FAM122C-206ENST00000470657 783 ntTSL 511.27□□□□□ -0.613e-6■■■■□ 20.2
YBX3P16989 FAM122C-210ENST00000495147 2063 ntTSL 1 (best)10.7□□□□□ -0.73e-6■■■■□ 20.2
YBX3P16989 FAM122C-202ENST00000370785 1344 ntAPPRIS P3 TSL 1 (best) BASIC10.57□□□□□ -0.723e-6■■■■□ 20.2
YBX3P16989 FAM122C-207ENST00000475361 2483 ntTSL 28.88□□□□□ -0.993e-6■■■■□ 20.2
YBX3P16989 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC8.73□□□□□ -1.013e-6■■■■□ 20.2
YBX3P16989 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.043e-6■■■■□ 20.2
YBX3P16989 DYM-205ENST00000577734 588 ntTSL 310.39□□□□□ -0.755e-6■■■■□ 20.2
YBX3P16989 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.97e-7■■■■□ 20.2
YBX3P16989 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.087e-7■■■■□ 20.2
YBX3P16989 ARRB1-209ENST00000532447 701 ntTSL 512.45□□□□□ -0.427e-7■■■■□ 20.2
YBX3P16989 TPRKB-206ENST00000470012 694 ntTSL 411.94□□□□□ -0.56e-8■■■■□ 20.2
YBX3P16989 ATXN7L3-205ENST00000587097 1341 ntTSL 540.74■■■■■ 4.112e-6■■■■□ 20.2
YBX3P16989 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.442e-6■■■■□ 20.2
YBX3P16989 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC28.66■■■□□ 2.182e-6■■■■□ 20.2
YBX3P16989 NFS1-209ENST00000456462 747 ntTSL 526.41■■□□□ 1.822e-6■■■■□ 20.2
YBX3P16989 NFS1-207ENST00000421540 563 ntTSL 525.97■■□□□ 1.752e-6■■■■□ 20.2
YBX3P16989 DYRK3-205ENST00000489878 1772 ntTSL 1 (best)24.8■■□□□ 1.562e-6■■■■□ 20.2
YBX3P16989 MED25-204ENST00000593636 1012 ntTSL 224.4■■□□□ 1.52e-6■■■■□ 20.2
YBX3P16989 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC23.56■■□□□ 1.362e-6■■■■□ 20.2
YBX3P16989 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.322e-6■■■■□ 20.2
YBX3P16989 PTPN23-202ENST00000456221 592 ntTSL 423.07■■□□□ 1.282e-6■■■■□ 20.2
YBX3P16989 PTPN23-204ENST00000477276 882 ntTSL 522.74■■□□□ 1.232e-6■■■■□ 20.2
YBX3P16989 NFS1-206ENST00000419569 551 ntTSL 322.27■■□□□ 1.162e-6■■■■□ 20.2
YBX3P16989 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.98■■□□□ 1.112e-6■■■■□ 20.2
YBX3P16989 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.9■□□□□ 0.942e-6■■■■□ 20.2
YBX3P16989 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.822e-6■■■■□ 20.2
YBX3P16989 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.762e-6■■■■□ 20.2
YBX3P16989 ABCA2-221ENST00000492260 2062 ntTSL 519.8■□□□□ 0.762e-6■■■■□ 20.2
YBX3P16989 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.79■□□□□ 0.62e-6■■■■□ 20.2
YBX3P16989 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.4■□□□□ 0.382e-6■■■■□ 20.2
YBX3P16989 ABCA2-215ENST00000470535 586 ntTSL 215.27■□□□□ 0.042e-6■■■■□ 20.2
YBX3P16989 GRAP2-205ENST00000461082 1594 ntTSL 215.09■□□□□ 0.012e-6■■■■□ 20.2
YBX3P16989 TM4SF19-202ENST00000440822 500 ntTSL 313.42□□□□□ -0.262e-6■■■■□ 20.2
YBX3P16989 ATXN7L3-209ENST00000590537 539 ntTSL 412.67□□□□□ -0.382e-6■■■■□ 20.2
YBX3P16989 ECD-201ENST00000372979 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.462e-6■■■■□ 20.2
YBX3P16989 ATXN7L3-203ENST00000586688 468 ntTSL 211.7□□□□□ -0.542e-6■■■■□ 20.2
YBX3P16989 ECD-205ENST00000454759 2084 ntTSL 1 (best) BASIC10.72□□□□□ -0.692e-6■■■■□ 20.2
YBX3P16989 KLHL18-201ENST00000232766 4620 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.692e-6■■■■□ 20.2
YBX3P16989 ECD-203ENST00000430082 2246 ntTSL 1 (best) BASIC10.54□□□□□ -0.722e-6■■■■□ 20.2
YBX3P16989 ECD-206ENST00000484976 1679 ntTSL 1 (best)10.47□□□□□ -0.732e-6■■■■□ 20.2
YBX3P16989 ATXN7L3-212ENST00000593073 527 ntTSL 410.27□□□□□ -0.772e-6■■■■□ 20.2
YBX3P16989 ASCC1-202ENST00000317168 2002 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.912e-6■■■■□ 20.2
YBX3P16989 HSP90AA2P-201ENST00000530115 2196 ntBASIC9.17□□□□□ -0.942e-6■■■■□ 20.2
YBX3P16989 ASCC1-207ENST00000486689 1798 ntTSL 59.08□□□□□ -0.962e-6■■■■□ 20.2
YBX3P16989 ASCC1-201ENST00000317126 1501 ntAPPRIS P1 TSL 2 BASIC8□□□□□ -1.132e-6■■■■□ 20.2
YBX3P16989 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC6.93□□□□□ -1.32e-6■■■■□ 20.2
YBX3P16989 ASCC1-214ENST00000530394 839 ntTSL 56.74□□□□□ -1.332e-6■■■■□ 20.2
YBX3P16989 ASCC1-219ENST00000534259 2422 ntTSL 26.41□□□□□ -1.382e-6■■■■□ 20.2
YBX3P16989 RPS15AP38-201ENST00000413110 372 ntBASIC5.92□□□□□ -1.462e-6■■■■□ 20.2
YBX3P16989 PSMD1-208ENST00000467792 444 ntTSL 25.66□□□□□ -1.52e-6■■■■□ 20.2
YBX3P16989 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC7□□□□□ -1.291e-6■■■■□ 20.2
YBX3P16989 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.311e-6■■■■□ 20.2
YBX3P16989 AGPAT2-203ENST00000470861 720 ntTSL 228.21■■■□□ 2.112e-6■■■■□ 20.1
YBX3P16989 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.717e-8■■■■□ 20.1
YBX3P16989 SLC19A1-211ENST00000528477 580 ntTSL 421.53■■□□□ 1.043e-7■■■■□ 20.1
YBX3P16989 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.092e-7■■■■□ 20.1
YBX3P16989 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC7.09□□□□□ -1.272e-7■■■■□ 20.1
YBX3P16989 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.9□□□□□ -2.112e-6■■■■□ 20.1
YBX3P16989 EPB41L1-217ENST00000479336 846 ntTSL 318.07■□□□□ 0.485e-7■■■■□ 20.1
YBX3P16989 EPB41L1-216ENST00000454226 593 ntTSL 317.99■□□□□ 0.475e-7■■■■□ 20.1
YBX3P16989 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.47■□□□□ 0.552e-6■■■■□ 20.1
YBX3P16989 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.012e-6■■■■□ 20.1
YBX3P16989 FLII-222ENST00000579294 3936 ntTSL 1 (best) BASIC11.92□□□□□ -0.52e-6■■■■□ 20.1
YBX3P16989 FLII-220ENST00000578101 4148 ntTSL 211.35□□□□□ -0.592e-6■■■■□ 20.1
YBX3P16989 FLII-215ENST00000545457 3975 ntTSL 2 BASIC10.48□□□□□ -0.732e-6■■■■□ 20.1
YBX3P16989 NPC2-206ENST00000555592 469 ntTSL 525.4■■□□□ 1.664e-8■■■■□ 20.1
YBX3P16989 TPRKB-205ENST00000463231 575 ntTSL 219.12■□□□□ 0.652e-6■■■■□ 20.1
YBX3P16989 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC19.12■□□□□ 0.652e-6■■■■□ 20.1
YBX3P16989 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.95■□□□□ 0.462e-6■■■■□ 20.1
Retrieved 100 of 29,075 protein–RNA pairs in 586.4 ms