Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.22■□□□□ 0.35
CXCL1P09341 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL1P09341 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL1P09341 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL1P09341 LINC01521-201ENST00000504184 1943 ntBASIC17.21■□□□□ 0.35
CXCL1P09341 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL1P09341 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL1P09341 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 AC025884.2-201ENST00000553429 711 ntBASIC17.21■□□□□ 0.35
CXCL1P09341 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL1P09341 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CXCL1P09341 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.34
CXCL1P09341 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.34
CXCL1P09341 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CXCL1P09341 FAM99A-202ENST00000538190 1989 ntBASIC17.2■□□□□ 0.34
CXCL1P09341 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CXCL1P09341 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.2■□□□□ 0.34
CXCL1P09341 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CXCL1P09341 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.2■□□□□ 0.34
CXCL1P09341 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CXCL1P09341 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL1P09341 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.2■□□□□ 0.34
CXCL1P09341 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CXCL1P09341 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC17.2■□□□□ 0.34
CXCL1P09341 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL1P09341 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CXCL1P09341 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CXCL1P09341 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 AC080038.3-201ENST00000623346 1952 ntBASIC17.19■□□□□ 0.34
CXCL1P09341 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CXCL1P09341 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
CXCL1P09341 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL1P09341 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
CXCL1P09341 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL1P09341 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL1P09341 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.18■□□□□ 0.34
CXCL1P09341 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL1P09341 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL1P09341 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.18■□□□□ 0.34
CXCL1P09341 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CXCL1P09341 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 MLEC-202ENST00000412616 841 ntTSL 3 BASIC17.18■□□□□ 0.34
CXCL1P09341 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC17.18■□□□□ 0.34
CXCL1P09341 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL1P09341 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL1P09341 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.17■□□□□ 0.34
CXCL1P09341 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.17■□□□□ 0.34
CXCL1P09341 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.17■□□□□ 0.34
CXCL1P09341 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CXCL1P09341 RNF166-209ENST00000567844 633 ntTSL 5 BASIC17.17■□□□□ 0.34
CXCL1P09341 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC17.17■□□□□ 0.34
CXCL1P09341 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.17■□□□□ 0.34
CXCL1P09341 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.17■□□□□ 0.34
CXCL1P09341 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL1P09341 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL1P09341 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.16■□□□□ 0.34
CXCL1P09341 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL1P09341 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.16■□□□□ 0.34
CXCL1P09341 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CXCL1P09341 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms