Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LMX1BO60663 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
LMX1BO60663 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
LMX1BO60663 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.52■□□□□ 0.72
LMX1BO60663 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 AC110285.6-201ENST00000617652 491 ntBASIC19.52■□□□□ 0.72
LMX1BO60663 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LMX1BO60663 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LMX1BO60663 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
LMX1BO60663 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
LMX1BO60663 AC004448.1-201ENST00000458332 883 ntBASIC19.51■□□□□ 0.71
LMX1BO60663 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.51■□□□□ 0.71
LMX1BO60663 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
LMX1BO60663 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.51■□□□□ 0.71
LMX1BO60663 GUSBP5-202ENST00000510805 1989 ntBASIC19.51■□□□□ 0.71
LMX1BO60663 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LMX1BO60663 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.51■□□□□ 0.71
LMX1BO60663 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
LMX1BO60663 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1BO60663 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC19.5■□□□□ 0.71
LMX1BO60663 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 AC096631.2-201ENST00000436136 790 ntBASIC19.5■□□□□ 0.71
LMX1BO60663 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.5■□□□□ 0.71
LMX1BO60663 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.5■□□□□ 0.71
LMX1BO60663 AC005837.3-201ENST00000612163 286 ntBASIC19.5■□□□□ 0.71
LMX1BO60663 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LMX1BO60663 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1BO60663 LSM4-201ENST00000252816 986 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1BO60663 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.49■□□□□ 0.71
LMX1BO60663 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.49■□□□□ 0.71
LMX1BO60663 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1BO60663 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LMX1BO60663 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.48■□□□□ 0.71
LMX1BO60663 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.48■□□□□ 0.71
LMX1BO60663 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.48■□□□□ 0.71
LMX1BO60663 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.48■□□□□ 0.71
LMX1BO60663 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.48■□□□□ 0.71
LMX1BO60663 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LMX1BO60663 LINC00565-201ENST00000562710 2331 ntBASIC19.48■□□□□ 0.71
LMX1BO60663 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
LMX1BO60663 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LMX1BO60663 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1BO60663 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1BO60663 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LMX1BO60663 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1BO60663 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.47■□□□□ 0.71
LMX1BO60663 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LMX1BO60663 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
LMX1BO60663 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.46■□□□□ 0.71
LMX1BO60663 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 CLDN5-201ENST00000403084 2357 ntBASIC19.46■□□□□ 0.71
LMX1BO60663 SENP5-202ENST00000419026 973 ntTSL 3 BASIC19.46■□□□□ 0.71
LMX1BO60663 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.46■□□□□ 0.71
LMX1BO60663 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.46■□□□□ 0.71
LMX1BO60663 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
LMX1BO60663 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
LMX1BO60663 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.46■□□□□ 0.71
LMX1BO60663 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LMX1BO60663 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1BO60663 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LMX1BO60663 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1BO60663 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1BO60663 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1BO60663 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1BO60663 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LMX1BO60663 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.45■□□□□ 0.7
LMX1BO60663 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1BO60663 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.45■□□□□ 0.7
LMX1BO60663 MIR4466-201ENST00000606121 54 ntBASIC19.45■□□□□ 0.7
LMX1BO60663 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1BO60663 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.45■□□□□ 0.7
LMX1BO60663 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LMX1BO60663 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.44■□□□□ 0.7
LMX1BO60663 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LMX1BO60663 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.44■□□□□ 0.7
LMX1BO60663 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms