Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.06■□□□□ 0.64
XRCC3O43542 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
XRCC3O43542 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
XRCC3O43542 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
XRCC3O43542 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
XRCC3O43542 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
XRCC3O43542 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
XRCC3O43542 MIR639-201ENST00000384974 98 ntBASIC19.05■□□□□ 0.64
XRCC3O43542 AC011551.1-201ENST00000614101 683 ntBASIC19.05■□□□□ 0.64
XRCC3O43542 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
XRCC3O43542 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
XRCC3O43542 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
XRCC3O43542 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
XRCC3O43542 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
XRCC3O43542 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
XRCC3O43542 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
XRCC3O43542 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.04■□□□□ 0.64
XRCC3O43542 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
XRCC3O43542 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
XRCC3O43542 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
XRCC3O43542 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
XRCC3O43542 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.03■□□□□ 0.64
XRCC3O43542 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
XRCC3O43542 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
XRCC3O43542 AC026310.3-201ENST00000625186 2373 ntBASIC19.03■□□□□ 0.64
XRCC3O43542 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.03■□□□□ 0.64
XRCC3O43542 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.03■□□□□ 0.64
XRCC3O43542 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
XRCC3O43542 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
XRCC3O43542 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
XRCC3O43542 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
XRCC3O43542 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
XRCC3O43542 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.02■□□□□ 0.64
XRCC3O43542 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.02■□□□□ 0.64
XRCC3O43542 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.02■□□□□ 0.64
XRCC3O43542 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
XRCC3O43542 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.02■□□□□ 0.64
XRCC3O43542 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
XRCC3O43542 AC087742.1-201ENST00000575880 1738 ntBASIC19.02■□□□□ 0.63
XRCC3O43542 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
XRCC3O43542 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.01■□□□□ 0.63
XRCC3O43542 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 MIR7108-201ENST00000614319 87 ntBASIC19.01■□□□□ 0.63
XRCC3O43542 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.01■□□□□ 0.63
XRCC3O43542 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
XRCC3O43542 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
XRCC3O43542 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
XRCC3O43542 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
XRCC3O43542 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19■□□□□ 0.63
XRCC3O43542 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19■□□□□ 0.63
XRCC3O43542 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19■□□□□ 0.63
XRCC3O43542 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
XRCC3O43542 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
XRCC3O43542 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.99■□□□□ 0.63
XRCC3O43542 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
XRCC3O43542 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.98■□□□□ 0.63
XRCC3O43542 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC3O43542 SPCS2P3-201ENST00000500401 656 ntBASIC18.98■□□□□ 0.63
XRCC3O43542 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
XRCC3O43542 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.98■□□□□ 0.63
XRCC3O43542 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC3O43542 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.98■□□□□ 0.63
XRCC3O43542 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC3O43542 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
XRCC3O43542 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC3O43542 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.97■□□□□ 0.63
XRCC3O43542 GPX1-201ENST00000419349 1106 ntBASIC18.97■□□□□ 0.63
XRCC3O43542 LONRF2P2-201ENST00000439212 571 ntBASIC18.97■□□□□ 0.63
XRCC3O43542 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
XRCC3O43542 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.97■□□□□ 0.63
XRCC3O43542 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC3O43542 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC3O43542 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC3O43542 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC3O43542 SLC25A24-204ENST00000569674 2357 ntBASIC18.97■□□□□ 0.63
XRCC3O43542 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC3O43542 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
XRCC3O43542 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.97■□□□□ 0.63
XRCC3O43542 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
XRCC3O43542 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
XRCC3O43542 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms