Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 AC026310.3-201ENST00000625186 2373 ntBASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAV1-2A0A0B4J238 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 MIR6765-201ENST00000614092 87 ntBASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV1-2A0A0B4J238 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.35■□□□□ 0.69
TRAV1-2A0A0B4J238 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 AL592293.1-201ENST00000502889 1188 ntBASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
TRAV1-2A0A0B4J238 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.33■□□□□ 0.69
TRAV1-2A0A0B4J238 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAV1-2A0A0B4J238 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.33■□□□□ 0.69
TRAV1-2A0A0B4J238 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV1-2A0A0B4J238 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 MIR7108-201ENST00000614319 87 ntBASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 PKD1P6-201ENST00000343738 4769 ntBASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TRAV1-2A0A0B4J238 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.31■□□□□ 0.68
TRAV1-2A0A0B4J238 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAV1-2A0A0B4J238 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 FAM99A-202ENST00000538190 1989 ntBASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV1-2A0A0B4J238 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms