Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 DDX11L2-201ENST00000437401 1398 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 GABPB1-206ENST00000543881 1450 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 ELP4-225ENST00000640533 1801 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AGGF1P10-201ENST00000635005 2191 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CCDC70-201ENST00000242819 1150 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TSPEAR-AS2-201ENST00000330490 823 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL021068.1-201ENST00000392097 911 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 HLA-DQB1-203ENST00000399082 1219 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AKR1C5P-201ENST00000427165 609 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC004771.2-201ENST00000430920 439 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 LINC00271-202ENST00000436554 655 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL118557.1-201ENST00000554408 440 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC106782.3-201ENST00000563429 258 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CHEK1-203ENST00000428830 1845 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL450468.2-201ENST00000565955 1889 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TBC1D3I-201ENST00000616671 1982 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SPANXD-201ENST00000370515 682 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CCDC103-203ENST00000410027 571 ntTSL 4 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 RN7SKP218-201ENST00000410222 292 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 C10orf71-AS1-201ENST00000437677 753 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TPI1P2-201ENST00000491343 752 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 RPL30-213ENST00000523172 274 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 LMO3-228ENST00000541846 573 ntAPPRIS P1 TSL 4 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC034102.3-201ENST00000551846 300 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SKAP1-AS1-201ENST00000582246 687 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC015802.4-203ENST00000592622 570 ntTSL 4 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 FXYD3-207ENST00000604255 780 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL592295.4-201ENST00000636161 997 ntTSL 4 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC106799.1-201ENST00000503188 1676 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CLK4-208ENST00000520957 1690 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC008040.5-201ENST00000599781 1781 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC007622.2-202ENST00000546714 1680 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 HTR7P1-202ENST00000624664 4411 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TBC1D3P3-201ENST00000342824 1080 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 RPL15-202ENST00000354811 820 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC003101.1-201ENST00000412403 459 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TMEM91-206ENST00000447302 721 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL356479.1-202ENST00000456933 714 ntTSL 3 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 LDHAL6CP-201ENST00000502352 1142 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC010601.1-201ENST00000569048 446 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 MIR3177-201ENST00000578255 82 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC244102.2-201ENST00000597568 955 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 RPL37A-212ENST00000600880 425 ntTSL 2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC092301.1-201ENST00000601618 764 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL136115.2-201ENST00000602889 587 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 NRSN2-205ENST00000608467 504 ntTSL 5 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TNNT3-216ENST00000641119 941 ntAPPRIS ALT2 BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AL139823.1-201ENST00000641871 1225 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 TP53TG3B-201ENST00000341305 2034 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AIRN-201ENST00000601203 4374 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 AC104590.1-202ENST00000558368 1921 ntBASIC8.66□□□□□ -1.02
VPS13DQ5THJ4 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AC116903.2-201ENST00000561674 1304 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 HP-203ENST00000357763 1482 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 CD27-AS1-201ENST00000399492 1094 ntTSL 1 (best) BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 LINC01044-201ENST00000413637 657 ntTSL 3 BASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 RPL10P12-201ENST00000427342 318 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 CDCA4P3-201ENST00000442572 689 ntBASIC8.65□□□□□ -1.02
VPS13DQ5THJ4 AP001107.8-201ENST00000530805 479 ntTSL 3 BASIC8.65□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms