Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 USP36-202ENST00000449938 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA1P55317 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA1P55317 AL583805.1-201ENST00000391389 531 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA1P55317 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA1P55317 RN7SL11P-201ENST00000471305 293 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 RN7SL258P-201ENST00000478664 300 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 MIR4754-201ENST00000582477 89 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC13.15□□□□□ -0.3
FOXA1P55317 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 SIGLEC22P-201ENST00000599104 714 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC13.15□□□□□ -0.3
FOXA1P55317 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
FOXA1P55317 CDK7-214ENST00000626796 358 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC13.15□□□□□ -0.3
FOXA1P55317 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC13.15□□□□□ -0.3
FOXA1P55317 AC139491.6-202ENST00000637171 2077 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 FOSB-203ENST00000443841 3346 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 AC090502.4-201ENST00000551714 1386 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 NPTN-IT1-201ENST00000628401 2283 ntBASIC13.15□□□□□ -0.3
FOXA1P55317 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
FOXA1P55317 ARHGEF9-235ENST00000637723 2146 ntTSL 5 BASIC13.15□□□□□ -0.3
FOXA1P55317 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC13.15□□□□□ -0.31
FOXA1P55317 NCDN-203ENST00000373253 3677 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
FOXA1P55317 AFG3L2P1-201ENST00000521792 1763 ntBASIC13.15□□□□□ -0.31
FOXA1P55317 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.31
FOXA1P55317 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 PES1-205ENST00000405677 2708 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 RALGDS-203ENST00000372062 3596 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 LINC01649-202ENST00000634255 1743 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 FAM86MP-201ENST00000340703 885 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 DKKL1P1-201ENST00000400550 698 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 TROVE2-206ENST00000400968 2143 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 AL008707.1-201ENST00000422498 534 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 AL807761.2-201ENST00000422849 729 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA1P55317 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA1P55317 BUD31-205ENST00000456893 512 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 AC012618.1-201ENST00000461223 412 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.14□□□□□ -0.31
FOXA1P55317 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 PIGCP1-201ENST00000527583 895 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
FOXA1P55317 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.14□□□□□ -0.31
FOXA1P55317 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC13.14□□□□□ -0.31
FOXA1P55317 MIR3677-201ENST00000578964 60 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 NDUFV2P1-201ENST00000596415 907 ntBASIC13.14□□□□□ -0.31
FOXA1P55317 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms