Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC022201.1-201ENST00000452525 577 ntTSL 4 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 AC120498.7-201ENST00000562876 330 ntBASIC15.9■□□□□ 0.14
HLA-DOAP06340 EIF5AP2-201ENST00000585668 1047 ntBASIC15.9■□□□□ 0.14
HLA-DOAP06340 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 AC018695.6-201ENST00000614011 534 ntBASIC15.9■□□□□ 0.14
HLA-DOAP06340 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PCDHA5-203ENST00000614258 4248 ntBASIC15.9■□□□□ 0.14
HLA-DOAP06340 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
HLA-DOAP06340 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
HLA-DOAP06340 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
HLA-DOAP06340 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
HLA-DOAP06340 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 HNRNPA1P10-201ENST00000444945 962 ntBASIC15.89■□□□□ 0.13
HLA-DOAP06340 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 BCRP4-201ENST00000506079 804 ntBASIC15.89■□□□□ 0.13
HLA-DOAP06340 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 DUT-207ENST00000559416 635 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 RN7SL121P-201ENST00000584223 273 ntBASIC15.89■□□□□ 0.13
HLA-DOAP06340 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 AC244097.1-201ENST00000621631 1216 ntBASIC15.89■□□□□ 0.13
HLA-DOAP06340 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 AL359845.1-201ENST00000458202 1648 ntBASIC15.89■□□□□ 0.13
HLA-DOAP06340 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC15.89■□□□□ 0.13
HLA-DOAP06340 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DOAP06340 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 HSD3BP1-201ENST00000286193 1111 ntBASIC15.88■□□□□ 0.13
HLA-DOAP06340 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.88■□□□□ 0.13
HLA-DOAP06340 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 RNU1-80P-201ENST00000459500 161 ntBASIC15.88■□□□□ 0.13
HLA-DOAP06340 RPS18P9-201ENST00000482817 460 ntBASIC15.88■□□□□ 0.13
HLA-DOAP06340 HINT1-204ENST00000506908 681 ntTSL 2 BASIC15.88■□□□□ 0.13
HLA-DOAP06340 BMF-206ENST00000558774 671 ntTSL 3 BASIC15.88■□□□□ 0.13
HLA-DOAP06340 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC15.88■□□□□ 0.13
HLA-DOAP06340 RN7SL524P-201ENST00000581152 300 ntBASIC15.88■□□□□ 0.13
HLA-DOAP06340 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DOAP06340 PRMT1P1-201ENST00000604252 1009 ntBASIC15.88■□□□□ 0.13
HLA-DOAP06340 AP003392.6-201ENST00000607709 325 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms