Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 AC024028.1-201ENST00000437145 437 ntTSL 3 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 PIGCP1-201ENST00000527583 895 ntBASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 MIR8071-1-201ENST00000616769 65 ntBASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 MIR8071-2-201ENST00000616772 65 ntBASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 AC139491.6-202ENST00000637171 2077 ntBASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 CA6-205ENST00000480186 1493 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 SRL-202ENST00000537996 1814 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 KRT18P62-201ENST00000446618 1287 ntBASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 DBP-202ENST00000593500 712 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
SHROOM3Q8TF72 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FUCA1P1-201ENST00000374476 1351 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A21P-201ENST00000510875 1396 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A15P-201ENST00000514465 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A6P-201ENST00000515148 1394 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A16P-201ENST00000526662 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A9P-201ENST00000527940 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A5P-201ENST00000528738 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A14P-201ENST00000530386 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FAM90A13P-201ENST00000534703 1395 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TGM5-207ENST00000622115 2202 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 ENPP7P8-202ENST00000527856 1345 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TUBB2BP1-201ENST00000404155 871 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 RN7SL375P-201ENST00000492442 298 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 LINC00634-202ENST00000505157 222 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 TBC1D3P6-201ENST00000505954 962 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 RN7SL134P-201ENST00000579756 303 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 FTLP5-201ENST00000586853 534 ntBASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
SHROOM3Q8TF72 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms