Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
VPS8Q8N3P4 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS8Q8N3P4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS8Q8N3P4 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
VPS8Q8N3P4 HDGF-202ENST00000368206 960 ntTSL 5 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AC007383.2-201ENST00000420509 752 ntTSL 2 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 DDX11L8-201ENST00000535849 366 ntBASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AC012158.2-201ENST00000536546 354 ntBASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AC073254.1-209ENST00000604677 631 ntTSL 5 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VPS8Q8N3P4 CICP17-201ENST00000418553 2377 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 OAS1-201ENST00000202917 1816 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 ALX1-201ENST00000316824 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 AL591368.1-201ENST00000437181 1449 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 AC005822.1-201ENST00000414124 1034 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 TEDDM2P-201ENST00000414169 786 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 RPL7AP53-201ENST00000468834 793 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 AC004801.1-201ENST00000549557 360 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 AP002761.4-201ENST00000565433 3361 ntBASIC20.76■□□□□ 0.91
VPS8Q8N3P4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
VPS8Q8N3P4 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 SYT17-204ENST00000562711 1702 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 AC008806.1-201ENST00000624962 2443 ntBASIC20.75■□□□□ 0.91
VPS8Q8N3P4 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 AL157823.1-201ENST00000403727 628 ntBASIC20.75■□□□□ 0.91
VPS8Q8N3P4 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 AL049597.1-201ENST00000447415 555 ntBASIC20.75■□□□□ 0.91
VPS8Q8N3P4 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 PPOX-204ENST00000462866 473 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 RN7SL523P-201ENST00000484401 298 ntBASIC20.75■□□□□ 0.91
VPS8Q8N3P4 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 AC009118.3-201ENST00000622896 873 ntBASIC20.75■□□□□ 0.91
VPS8Q8N3P4 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 ZSCAN5C-202ENST00000534327 1892 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VPS8Q8N3P4 AC005549.1-201ENST00000579438 1629 ntBASIC20.74■□□□□ 0.91
VPS8Q8N3P4 TMUB2-214ENST00000590235 1569 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 JAML-211ENST00000533261 1508 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 CTCFL-211ENST00000502686 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 NFATC4-212ENST00000554473 1382 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 PITPNB-201ENST00000320996 2826 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
VPS8Q8N3P4 TULP3P1-202ENST00000453253 1291 ntBASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms