Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
COL28A1Q2UY09 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TUBB8P4-201ENST00000511806 1324 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AL022313.4-201ENST00000562756 2046 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 FAM21EP-201ENST00000417804 985 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 HNRNPA1P21-201ENST00000424115 961 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 DLK1-205ENST00000556051 469 ntTSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 RN7SL605P-201ENST00000577229 281 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC005777.1-201ENST00000588332 187 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AP001462.1-201ENST00000594089 452 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AL021707.6-201ENST00000609212 491 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC005746.3-201ENST00000614751 393 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC073869.4-201ENST00000620841 800 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC048382.6-201ENST00000621980 1223 ntBASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL28A1Q2UY09 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC13.16□□□□□ -0.3
COL28A1Q2UY09 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms