Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.87□□□□□ -0.35
RAE1P78406 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
RAE1P78406 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
RAE1P78406 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 AC119674.2-203ENST00000642129 1675 ntAPPRIS P5 BASIC12.86□□□□□ -0.35
RAE1P78406 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 CA6-205ENST00000480186 1493 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 AC008764.8-201ENST00000623966 2717 ntBASIC12.86□□□□□ -0.35
RAE1P78406 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 ACTBP14-201ENST00000411655 1089 ntBASIC12.86□□□□□ -0.35
RAE1P78406 SLC25A24P2-201ENST00000415059 510 ntBASIC12.86□□□□□ -0.35
RAE1P78406 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 RNA5SP417-201ENST00000516459 108 ntBASIC12.86□□□□□ -0.35
RAE1P78406 NEU3-205ENST00000531619 582 ntTSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC12.86□□□□□ -0.35
RAE1P78406 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC12.86□□□□□ -0.35
RAE1P78406 RN7SL556P-201ENST00000582856 298 ntBASIC12.86□□□□□ -0.35
RAE1P78406 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
RAE1P78406 AC103810.10-201ENST00000606504 343 ntBASIC12.86□□□□□ -0.35
RAE1P78406 AC025262.2-201ENST00000623975 1056 ntBASIC12.86□□□□□ -0.35
RAE1P78406 LINC00244-201ENST00000625073 613 ntBASIC12.86□□□□□ -0.35
RAE1P78406 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 KLF4-206ENST00000610832 1956 ntTSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 AL390066.1-201ENST00000456414 2302 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 PAK1-215ENST00000530617 3001 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 TNRC6B-203ENST00000402203 3444 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 AFG3L2P1-201ENST00000521792 1763 ntBASIC12.86□□□□□ -0.35
RAE1P78406 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 LINC00563-201ENST00000566370 1400 ntBASIC12.86□□□□□ -0.35
RAE1P78406 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 Z97653.2-201ENST00000623057 1418 ntBASIC12.86□□□□□ -0.35
RAE1P78406 TTN-AS1-209ENST00000456053 2033 ntTSL 2 BASIC12.86□□□□□ -0.35
RAE1P78406 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 PARP10-203ENST00000524918 3469 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
RAE1P78406 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
RAE1P78406 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 CSNK1G1-209ENST00000634811 2592 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
RAE1P78406 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 ARHGEF3-213ENST00000496106 1994 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 TP73-211ENST00000604074 4806 ntTSL 5 BASIC12.85□□□□□ -0.35
RAE1P78406 AL645937.6-201ENST00000641122 3727 ntBASIC12.85□□□□□ -0.35
RAE1P78406 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 ZFP69B-201ENST00000361584 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 PPARG-206ENST00000397012 2006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
RAE1P78406 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
RAE1P78406 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
RAE1P78406 SERF2-204ENST00000402131 586 ntTSL 2 BASIC12.85□□□□□ -0.35
RAE1P78406 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC12.85□□□□□ -0.35
RAE1P78406 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms