Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 DPY19L2P4-201ENST00000479881 442 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 HNRNPA1P56-201ENST00000505767 954 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AC011431.1-201ENST00000512971 230 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 NAA40-205ENST00000539656 577 ntTSL 4 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 CES1P2-201ENST00000566467 1242 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AP005264.5-201ENST00000590066 467 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 PRMT1P1-201ENST00000604252 1009 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 URAHP-205ENST00000610227 398 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC13.21□□□□□ -0.29
COL28A1Q2UY09 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL28A1Q2UY09 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 C2-206ENST00000442278 2434 ntTSL 2 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
COL28A1Q2UY09 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 MIR339-201ENST00000362153 94 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 OR52M2P-201ENST00000414298 959 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 KRT19P4-201ENST00000443208 943 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 B9D1-206ENST00000461069 923 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 EEF1GP8-201ENST00000506566 1154 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 RN7SKP155-201ENST00000516031 288 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC004923.3-201ENST00000527532 355 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC016582.2-202ENST00000587765 1094 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 OR3A1-202ENST00000615105 966 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC245369.7-201ENST00000631386 350 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC131212.3-201ENST00000624087 4219 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC007952.5-201ENST00000572818 1486 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC138761.6-201ENST00000583997 1423 ntBASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
COL28A1Q2UY09 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms