Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA1P55317 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
FOXA1P55317 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.21□□□□□ -0.3
FOXA1P55317 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA1P55317 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA1P55317 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.21□□□□□ -0.3
FOXA1P55317 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA1P55317 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA1P55317 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 GUCY1A3-205ENST00000506455 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 AC011700.1-201ENST00000610409 2627 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.2□□□□□ -0.3
FOXA1P55317 AC092573.1-201ENST00000433054 884 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 SPTLC1P5-201ENST00000450718 252 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.2□□□□□ -0.3
FOXA1P55317 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.2□□□□□ -0.3
FOXA1P55317 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC13.2□□□□□ -0.3
FOXA1P55317 NAA38-204ENST00000575208 529 ntTSL 3 BASIC13.2□□□□□ -0.3
FOXA1P55317 AC132812.1-201ENST00000583145 892 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 AC091544.8-201ENST00000619490 361 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 TUBGCP5-208ENST00000620435 3342 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 AL513497.1-201ENST00000624273 2083 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 FAM90A26-201ENST00000512047 2492 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 NLRP7-201ENST00000328092 3299 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 NLRP7-202ENST00000340844 3250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA1P55317 LNP1-201ENST00000383693 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA1P55317 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA1P55317 AC005154.3-201ENST00000419639 1393 ntBASIC13.2□□□□□ -0.3
FOXA1P55317 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 AC022400.8-201ENST00000623453 3599 ntBASIC13.19□□□□□ -0.3
FOXA1P55317 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 AC019109.1-201ENST00000401725 1874 ntBASIC13.19□□□□□ -0.3
FOXA1P55317 HCN3-201ENST00000368358 3718 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.19□□□□□ -0.3
FOXA1P55317 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 AC026320.2-201ENST00000434379 478 ntBASIC13.19□□□□□ -0.3
FOXA1P55317 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA1P55317 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.19□□□□□ -0.3
FOXA1P55317 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA1P55317 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.19□□□□□ -0.3
FOXA1P55317 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.19□□□□□ -0.3
FOXA1P55317 AP001258.2-201ENST00000529891 490 ntBASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms