Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL160313.2-201ENST00000555875 493 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 SALL1-204ENST00000566102 565 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 AC015911.7-201ENST00000587542 958 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 IL17RB-201ENST00000288167 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.5□□□□□ -0.25
COL6A3P12111 IMPDH1P8-201ENST00000413639 1525 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 TUBA1A-207ENST00000550767 1384 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 CLK4-208ENST00000520957 1690 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 NDRG4-254ENST00000569923 1312 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 OR10D5P-201ENST00000392760 915 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 SKA1-203ENST00000417656 1095 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 LINC01682-201ENST00000435973 385 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 AP000695.2-202ENST00000454980 649 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 ST3GAL6-207ENST00000468553 715 ntTSL 3 BASIC13.5□□□□□ -0.25
COL6A3P12111 AC023824.6-201ENST00000565523 703 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 AP000547.3-203ENST00000591299 751 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 AC009309.1-201ENST00000610262 460 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 AP000892.2-201ENST00000613535 324 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 FRG2EP-201ENST00000634243 835 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 GNG14-202ENST00000640151 425 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 SERPINA1-220ENST00000636712 1485 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 PTCD2-207ENST00000503868 1653 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 C10orf128-203ENST00000374153 1569 ntAPPRIS ALT2 TSL 3 BASIC13.5□□□□□ -0.25
COL6A3P12111 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 AL157414.1-201ENST00000366097 770 ntTSL 3 BASIC13.5□□□□□ -0.25
COL6A3P12111 IL32-204ENST00000396887 789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL6A3P12111 UQCRFS1P2-201ENST00000426701 722 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 FXYD6P2-201ENST00000444174 288 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 SLED1-201ENST00000506741 751 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 SNORA50B-201ENST00000517198 135 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 ARL1-209ENST00000551671 879 ntTSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 Metazoa_SRP.51-201ENST00000570437 272 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 AC020663.1-201ENST00000588099 556 ntTSL 4 BASIC13.5□□□□□ -0.25
COL6A3P12111 SNORA50B-202ENST00000630737 137 ntBASIC13.5□□□□□ -0.25
COL6A3P12111 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL6A3P12111 TMEM106A-204ENST00000588659 1437 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL6A3P12111 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 RBMS3-207ENST00000445033 1120 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 DANT1-202ENST00000451869 444 ntTSL 3 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC009502.2-201ENST00000452903 766 ntBASIC13.49□□□□□ -0.25
COL6A3P12111 IGKV2D-24-201ENST00000462693 390 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL6A3P12111 IGKV2-24-201ENST00000484817 390 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC012317.1-201ENST00000563611 534 ntTSL 4 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC007608.2-201ENST00000569940 1146 ntTSL 3 BASIC13.49□□□□□ -0.25
COL6A3P12111 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL6A3P12111 RPUSD4-208ENST00000533628 2053 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 BX005132.1-201ENST00000641403 1580 ntBASIC13.49□□□□□ -0.25
COL6A3P12111 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC006262.1-201ENST00000593980 1316 ntTSL 5 BASIC13.49□□□□□ -0.25
COL6A3P12111 CEP70-208ENST00000474781 2028 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL6A3P12111 LINC01219-201ENST00000418612 722 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 AL356056.2-202ENST00000430188 553 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 LY86-AS1-203ENST00000447858 938 ntTSL 3 BASIC13.49□□□□□ -0.25
COL6A3P12111 AC109635.2-201ENST00000525654 524 ntTSL 3 BASIC13.49□□□□□ -0.25
COL6A3P12111 GLTP-205ENST00000544393 914 ntTSL 3 BASIC13.49□□□□□ -0.25
COL6A3P12111 RPL23-207ENST00000577407 615 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 LINC00868-203ENST00000592919 853 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.49□□□□□ -0.25
COL6A3P12111 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL6A3P12111 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
COL6A3P12111 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 FAM95B1-211ENST00000592053 1541 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 AL669942.1-203ENST00000610972 1541 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL6A3P12111 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
COL6A3P12111 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms