Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 AC083964.2-201ENST00000623988 2396 ntBASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 PCDHA4-202ENST00000512229 4163 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
PDLIM3Q53GG5 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 CACNA1F-203ENST00000376265 6070 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 OS9-218ENST00000551035 2246 ntTSL 2 BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 LINC02486-201ENST00000604157 3000 ntBASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 PUM2-203ENST00000361078 6251 ntTSL 2 BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 LAP3P2-201ENST00000454686 1454 ntBASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.52□□□□□ -0.56
PDLIM3Q53GG5 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 HPGD-203ENST00000422112 805 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 FAM8A4P-201ENST00000435433 1213 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 RTN3P1-201ENST00000536295 711 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 RNF41-210ENST00000552244 716 ntTSL 3 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 DNM1P30-201ENST00000563586 452 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 EIF5AP2-201ENST00000585668 1047 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 OR10B1P-201ENST00000601666 907 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AC233280.19-201ENST00000633223 136 ntBASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 FER1L5-207ENST00000641731 6294 ntAPPRIS ALT2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 LRPPRC-201ENST00000260665 6335 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 KDM2A-210ENST00000529006 6967 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
PDLIM3Q53GG5 PTCH1-207ENST00000429896 6563 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MYO1C-202ENST00000361007 4734 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 STK25-235ENST00000543554 2556 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 GPR179-204ENST00000621958 7983 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RPS9P1-201ENST00000419943 583 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AC012362.1-201ENST00000434906 739 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 SKA2-202ENST00000437036 625 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 ST13P19-201ENST00000442505 1124 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AGPAT5P1-201ENST00000455855 1019 ntBASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC11.51□□□□□ -0.57
PDLIM3Q53GG5 FAM86KP-201ENST00000509817 987 ntBASIC11.51□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms