Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SMARCA1P28370 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC15.57■□□□□ 0.08
SMARCA1P28370 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SMARCA1P28370 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC15.57■□□□□ 0.08
SMARCA1P28370 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SNORA50D-201ENST00000408059 134 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC15.56■□□□□ 0.08
SMARCA1P28370 KRT18P46-201ENST00000435568 1279 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 RN7SL396P-201ENST00000471086 295 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 ALG1L3P-201ENST00000503331 765 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 HINT1-204ENST00000506908 681 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 NDUFB2P1-201ENST00000506966 295 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC15.56■□□□□ 0.08
SMARCA1P28370 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
SMARCA1P28370 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SNORA50D-202ENST00000627561 132 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 SLCO2A1-208ENST00000493729 1918 ntTSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 AL022323.5-201ENST00000624101 2059 ntBASIC15.56■□□□□ 0.08
SMARCA1P28370 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SMARCA1P28370 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SMARCA1P28370 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SMARCA1P28370 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SMARCA1P28370 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 PTN-202ENST00000393083 1599 ntTSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 AC064850.1-201ENST00000413279 1398 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 AC034205.3-201ENST00000603595 1376 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC15.55■□□□□ 0.08
SMARCA1P28370 HLA-DMA-202ENST00000395303 1007 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 AL627389.1-201ENST00000413508 1182 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC15.55■□□□□ 0.08
SMARCA1P28370 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.55■□□□□ 0.08
SMARCA1P28370 VDAC1P11-201ENST00000458323 852 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
SMARCA1P28370 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC15.55■□□□□ 0.08
SMARCA1P28370 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.55■□□□□ 0.08
SMARCA1P28370 DUX4L33-201ENST00000635217 958 ntBASIC15.55■□□□□ 0.08
SMARCA1P28370 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SMARCA1P28370 CCER1-201ENST00000358859 2962 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SMARCA1P28370 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC15.55■□□□□ 0.08
SMARCA1P28370 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 DDC-201ENST00000357936 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SMARCA1P28370 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SMARCA1P28370 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.54■□□□□ 0.08
SMARCA1P28370 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms