Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 MYADM-201ENST00000336967 3047 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 AC015819.3-201ENST00000624305 2674 ntBASIC13.26□□□□□ -0.29
FOXA1P55317 PIGG-205ENST00000503111 2629 ntTSL 2 BASIC13.26□□□□□ -0.29
FOXA1P55317 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
FOXA1P55317 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
FOXA1P55317 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 AL450468.2-201ENST00000565955 1889 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 NFKBIZ-202ENST00000326172 3923 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 ELK2AP-201ENST00000392510 1007 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 MIR1307-201ENST00000408840 149 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 SSR4P1-201ENST00000415143 412 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.25□□□□□ -0.29
FOXA1P55317 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.25□□□□□ -0.29
FOXA1P55317 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.25□□□□□ -0.29
FOXA1P55317 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.25□□□□□ -0.29
FOXA1P55317 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 NAA40-205ENST00000539656 577 ntTSL 4 BASIC13.25□□□□□ -0.29
FOXA1P55317 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 MIR4265-201ENST00000582152 99 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 NAT9-222ENST00000583476 583 ntTSL 3 BASIC13.25□□□□□ -0.29
FOXA1P55317 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 LINC01783-202ENST00000614408 828 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 BX284668.2-205ENST00000619677 828 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 AC107375.1-201ENST00000564464 2231 ntBASIC13.25□□□□□ -0.29
FOXA1P55317 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 NUP85-201ENST00000245544 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 ACTN1-202ENST00000376839 2824 ntTSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
FOXA1P55317 MME-204ENST00000462745 3590 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
FOXA1P55317 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
FOXA1P55317 PI4KB-201ENST00000368872 3331 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 PLD5-204ENST00000442594 3305 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 ABLIM2-206ENST00000447017 2902 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 TRIM37-203ENST00000393066 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
FOXA1P55317 PDXDC2P-206ENST00000534700 1315 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.24□□□□□ -0.29
FOXA1P55317 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC13.24□□□□□ -0.29
FOXA1P55317 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.24□□□□□ -0.29
FOXA1P55317 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 AL627231.1-201ENST00000394467 1125 ntBASIC13.24□□□□□ -0.29
FOXA1P55317 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
FOXA1P55317 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms