Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 UNC93B3-201ENST00000308076 687 ntBASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCDHB3Q9Y5E6 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 AL136162.1-201ENST00000607711 1078 ntBASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCDHB3Q9Y5E6 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 AC135279.3-201ENST00000610945 1311 ntBASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.73■■□□□ 1.07
PCDHB3Q9Y5E6 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.72■■□□□ 1.07
PCDHB3Q9Y5E6 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PCDHB3Q9Y5E6 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
PCDHB3Q9Y5E6 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 ANOS2P-203ENST00000472227 1816 ntBASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PCDHB3Q9Y5E6 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
PCDHB3Q9Y5E6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms