Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.97■□□□□ 0.79
EXOSC1Q9Y3B2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 GPX1-201ENST00000419349 1106 ntBASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
EXOSC1Q9Y3B2 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.95■□□□□ 0.78
EXOSC1Q9Y3B2 AL024507.2-201ENST00000606070 2574 ntBASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.94■□□□□ 0.78
EXOSC1Q9Y3B2 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 SPCS2P3-201ENST00000500401 656 ntBASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
EXOSC1Q9Y3B2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 AL137060.1-201ENST00000618151 2648 ntBASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
EXOSC1Q9Y3B2 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 MIR6765-201ENST00000614092 87 ntBASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 MIR7108-201ENST00000614319 87 ntBASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 AL353803.4-201ENST00000565882 1934 ntBASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
EXOSC1Q9Y3B2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 LONRF2P2-201ENST00000439212 571 ntBASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 AL592293.1-201ENST00000502889 1188 ntBASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
EXOSC1Q9Y3B2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
EXOSC1Q9Y3B2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.89■□□□□ 0.77
EXOSC1Q9Y3B2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.89■□□□□ 0.77
EXOSC1Q9Y3B2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
EXOSC1Q9Y3B2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
EXOSC1Q9Y3B2 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 AC080038.3-201ENST00000623346 1952 ntBASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
EXOSC1Q9Y3B2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms