Protein–RNA interactions for Protein: Q9Y2Q9

MRPS28, 28S ribosomal protein S28, mitochondrial, humanhuman

Known RBP Predictions only

Length 187 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28Q9Y2Q9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MRPS28Q9Y2Q9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MRPS28Q9Y2Q9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MRPS28Q9Y2Q9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MRPS28Q9Y2Q9 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MRPS28Q9Y2Q9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 PVT1_1.1-201ENST00000615125 194 ntBASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRPS28Q9Y2Q9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.66
MRPS28Q9Y2Q9 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MRPS28Q9Y2Q9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 AC004987.1-201ENST00000428627 508 ntBASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 ATP5G2P3-201ENST00000429083 425 ntBASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRPS28Q9Y2Q9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
MRPS28Q9Y2Q9 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 AC010980.1-201ENST00000587192 1142 ntBASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 AC137767.1-201ENST00000602918 1920 ntBASIC19.12■□□□□ 0.65
MRPS28Q9Y2Q9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
MRPS28Q9Y2Q9 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms