Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
CDX2Q99626 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.83■■□□□ 1.41
CDX2Q99626 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
CDX2Q99626 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.83■■□□□ 1.41
CDX2Q99626 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.83■■□□□ 1.41
CDX2Q99626 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
CDX2Q99626 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
CDX2Q99626 AC096887.2-201ENST00000623443 1957 ntBASIC23.83■■□□□ 1.41
CDX2Q99626 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
CDX2Q99626 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CDX2Q99626 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC23.82■■□□□ 1.4
CDX2Q99626 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC23.82■■□□□ 1.4
CDX2Q99626 SMUG1P1-201ENST00000590640 811 ntBASIC23.82■■□□□ 1.4
CDX2Q99626 AC005181.1-201ENST00000604782 1256 ntBASIC23.82■■□□□ 1.4
CDX2Q99626 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CDX2Q99626 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CDX2Q99626 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
CDX2Q99626 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX2Q99626 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.81■■□□□ 1.4
CDX2Q99626 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CDX2Q99626 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC23.81■■□□□ 1.4
CDX2Q99626 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.81■■□□□ 1.4
CDX2Q99626 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX2Q99626 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX2Q99626 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CDX2Q99626 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX2Q99626 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.8■■□□□ 1.4
CDX2Q99626 AL596275.1-201ENST00000423464 877 ntBASIC23.8■■□□□ 1.4
CDX2Q99626 AC073210.2-201ENST00000430369 194 ntBASIC23.8■■□□□ 1.4
CDX2Q99626 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.8■■□□□ 1.4
CDX2Q99626 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.8■■□□□ 1.4
CDX2Q99626 AC231657.2-201ENST00000624556 255 ntBASIC23.8■■□□□ 1.4
CDX2Q99626 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX2Q99626 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX2Q99626 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CDX2Q99626 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CDX2Q99626 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.79■■□□□ 1.4
CDX2Q99626 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDX2Q99626 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CDX2Q99626 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.79■■□□□ 1.4
CDX2Q99626 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CDX2Q99626 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDX2Q99626 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDX2Q99626 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CDX2Q99626 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CDX2Q99626 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDX2Q99626 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDX2Q99626 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC23.78■■□□□ 1.4
CDX2Q99626 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
CDX2Q99626 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC23.77■■□□□ 1.4
CDX2Q99626 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 AC007322.1-201ENST00000426983 750 ntBASIC23.77■■□□□ 1.4
CDX2Q99626 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.77■■□□□ 1.4
CDX2Q99626 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
CDX2Q99626 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CDX2Q99626 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
CDX2Q99626 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CDX2Q99626 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDX2Q99626 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDX2Q99626 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CDX2Q99626 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CDX2Q99626 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
CDX2Q99626 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.76■■□□□ 1.39
CDX2Q99626 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC23.76■■□□□ 1.39
CDX2Q99626 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CDX2Q99626 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDX2Q99626 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CDX2Q99626 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
CDX2Q99626 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.75■■□□□ 1.39
CDX2Q99626 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.75■■□□□ 1.39
CDX2Q99626 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.75■■□□□ 1.39
CDX2Q99626 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CDX2Q99626 AC098590.1-201ENST00000468126 897 ntBASIC23.75■■□□□ 1.39
CDX2Q99626 AC098934.4-201ENST00000564127 592 ntBASIC23.75■■□□□ 1.39
CDX2Q99626 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
CDX2Q99626 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDX2Q99626 RNA5SP413-201ENST00000516373 109 ntBASIC23.74■■□□□ 1.39
CDX2Q99626 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.74■■□□□ 1.39
CDX2Q99626 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.74■■□□□ 1.39
CDX2Q99626 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
CDX2Q99626 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.74■■□□□ 1.39
CDX2Q99626 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDX2Q99626 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CDX2Q99626 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDX2Q99626 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CDX2Q99626 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
CDX2Q99626 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDX2Q99626 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CDX2Q99626 DUSP5P2-201ENST00000426873 1033 ntBASIC23.73■■□□□ 1.39
CDX2Q99626 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms