Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VRK3Q8IV63 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 FP325331.1-202ENST00000623531 1380 ntBASIC21.88■■□□□ 1.09
VRK3Q8IV63 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VRK3Q8IV63 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
VRK3Q8IV63 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VRK3Q8IV63 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VRK3Q8IV63 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 AC006455.2-201ENST00000429931 906 ntBASIC21.87■■□□□ 1.09
VRK3Q8IV63 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 AC099791.2-201ENST00000605725 427 ntBASIC21.87■■□□□ 1.09
VRK3Q8IV63 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VRK3Q8IV63 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VRK3Q8IV63 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
VRK3Q8IV63 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.86■■□□□ 1.09
VRK3Q8IV63 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VRK3Q8IV63 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VRK3Q8IV63 SRD5A1P1-201ENST00000442297 786 ntBASIC21.86■■□□□ 1.09
VRK3Q8IV63 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.86■■□□□ 1.09
VRK3Q8IV63 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
VRK3Q8IV63 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VRK3Q8IV63 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VRK3Q8IV63 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.86■■□□□ 1.09
VRK3Q8IV63 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.86■■□□□ 1.09
VRK3Q8IV63 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
VRK3Q8IV63 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.85■■□□□ 1.09
VRK3Q8IV63 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
VRK3Q8IV63 AL136116.3-201ENST00000402907 1138 ntBASIC21.85■■□□□ 1.09
VRK3Q8IV63 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 DUX4L4-201ENST00000566884 1269 ntBASIC21.85■■□□□ 1.09
VRK3Q8IV63 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.85■■□□□ 1.09
VRK3Q8IV63 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VRK3Q8IV63 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.84■■□□□ 1.09
VRK3Q8IV63 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.84■■□□□ 1.09
VRK3Q8IV63 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.84■■□□□ 1.09
VRK3Q8IV63 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
VRK3Q8IV63 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VRK3Q8IV63 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VRK3Q8IV63 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
VRK3Q8IV63 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
VRK3Q8IV63 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
VRK3Q8IV63 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
VRK3Q8IV63 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
VRK3Q8IV63 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VRK3Q8IV63 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.82■■□□□ 1.08
VRK3Q8IV63 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VRK3Q8IV63 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VRK3Q8IV63 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
VRK3Q8IV63 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.82■■□□□ 1.08
VRK3Q8IV63 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.81■■□□□ 1.08
VRK3Q8IV63 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VRK3Q8IV63 AC009086.3-201ENST00000623486 1008 ntBASIC21.81■■□□□ 1.08
VRK3Q8IV63 AC241377.3-202ENST00000626088 1088 ntBASIC21.81■■□□□ 1.08
VRK3Q8IV63 AC241585.3-202ENST00000628937 1088 ntBASIC21.81■■□□□ 1.08
VRK3Q8IV63 AC245100.8-202ENST00000629247 1058 ntBASIC21.81■■□□□ 1.08
VRK3Q8IV63 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
VRK3Q8IV63 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.8■■□□□ 1.08
VRK3Q8IV63 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.8■■□□□ 1.08
VRK3Q8IV63 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.8■■□□□ 1.08
VRK3Q8IV63 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
VRK3Q8IV63 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VRK3Q8IV63 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.8■■□□□ 1.08
VRK3Q8IV63 AC008406.3-201ENST00000620001 1374 ntBASIC21.8■■□□□ 1.08
VRK3Q8IV63 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VRK3Q8IV63 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
VRK3Q8IV63 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VRK3Q8IV63 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VRK3Q8IV63 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
VRK3Q8IV63 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
VRK3Q8IV63 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VRK3Q8IV63 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms