Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
CNKSR3Q6P9H4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.33■■□□□ 1.49
CNKSR3Q6P9H4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.33■■□□□ 1.48
CNKSR3Q6P9H4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.33■■□□□ 1.48
CNKSR3Q6P9H4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 HLA-L-209ENST00000420110 1011 ntBASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
CNKSR3Q6P9H4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.31■■□□□ 1.48
CNKSR3Q6P9H4 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CNKSR3Q6P9H4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 AC080038.1-201ENST00000611274 1154 ntBASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CNKSR3Q6P9H4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
CNKSR3Q6P9H4 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 AC006015.1-201ENST00000429970 570 ntBASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC24.27■■□□□ 1.48
CNKSR3Q6P9H4 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CNKSR3Q6P9H4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 LINC01529-204ENST00000636474 1715 ntBASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 KRT18P61-201ENST00000585825 1298 ntBASIC24.25■■□□□ 1.47
CNKSR3Q6P9H4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms