Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 AC133637.1-201ENST00000624115 1537 ntBASIC20.38■□□□□ 0.85
RPUSD3Q6P087 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 AL354811.1-201ENST00000610286 706 ntBASIC20.38■□□□□ 0.85
RPUSD3Q6P087 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC20.38■□□□□ 0.85
RPUSD3Q6P087 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPUSD3Q6P087 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPUSD3Q6P087 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 KRT18P5-201ENST00000436075 1291 ntBASIC20.35■□□□□ 0.85
RPUSD3Q6P087 OR2I1P-207ENST00000453522 948 ntBASIC20.35■□□□□ 0.85
RPUSD3Q6P087 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 AC012414.1-201ENST00000556676 535 ntBASIC20.35■□□□□ 0.85
RPUSD3Q6P087 DUX4L4-201ENST00000566884 1269 ntBASIC20.35■□□□□ 0.85
RPUSD3Q6P087 AC022517.1-201ENST00000592429 346 ntBASIC20.35■□□□□ 0.85
RPUSD3Q6P087 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPUSD3Q6P087 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 AC138932.3-201ENST00000567634 1902 ntBASIC20.34■□□□□ 0.85
RPUSD3Q6P087 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPUSD3Q6P087 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.33■□□□□ 0.85
RPUSD3Q6P087 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
RPUSD3Q6P087 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
RPUSD3Q6P087 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20.33■□□□□ 0.84
RPUSD3Q6P087 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RPUSD3Q6P087 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L2-201ENST00000561772 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L6-201ENST00000626483 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L1-201ENST00000627662 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L8-201ENST00000629013 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L3-201ENST00000630187 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L7-201ENST00000630678 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 DUX4L5-201ENST00000630834 1275 ntBASIC20.32■□□□□ 0.84
RPUSD3Q6P087 AL031602.1-201ENST00000633169 911 ntBASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms