Protein–RNA interactions for Protein: P56703

WNT3, Proto-oncogene Wnt-3, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
WNT3P56703 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.16■□□□□ 0.98
WNT3P56703 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
WNT3P56703 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
WNT3P56703 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
WNT3P56703 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.16■□□□□ 0.98
WNT3P56703 LINC00526-201ENST00000581067 1875 ntBASIC21.15■□□□□ 0.98
WNT3P56703 ECEL1P1-201ENST00000373592 1742 ntBASIC21.15■□□□□ 0.98
WNT3P56703 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 BX664725.1-201ENST00000438252 379 ntBASIC21.15■□□□□ 0.98
WNT3P56703 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
WNT3P56703 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 Z92544.1-202ENST00000571933 1220 ntBASIC21.15■□□□□ 0.98
WNT3P56703 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.15■□□□□ 0.98
WNT3P56703 MIR4787-201ENST00000607364 84 ntBASIC21.15■□□□□ 0.98
WNT3P56703 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.15■□□□□ 0.98
WNT3P56703 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
WNT3P56703 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.14■□□□□ 0.98
WNT3P56703 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
WNT3P56703 KRT125P-201ENST00000546827 989 ntBASIC21.14■□□□□ 0.97
WNT3P56703 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
WNT3P56703 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
WNT3P56703 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.14■□□□□ 0.97
WNT3P56703 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
WNT3P56703 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.14■□□□□ 0.97
WNT3P56703 ESRRAP2-201ENST00000418437 1549 ntBASIC21.14■□□□□ 0.97
WNT3P56703 AC021242.3-201ENST00000607598 1377 ntBASIC21.13■□□□□ 0.97
WNT3P56703 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.13■□□□□ 0.97
WNT3P56703 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
WNT3P56703 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
WNT3P56703 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
WNT3P56703 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
WNT3P56703 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
WNT3P56703 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
WNT3P56703 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
WNT3P56703 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.12■□□□□ 0.97
WNT3P56703 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.12■□□□□ 0.97
WNT3P56703 AC144652.1-201ENST00000609974 1624 ntBASIC21.12■□□□□ 0.97
WNT3P56703 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
WNT3P56703 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.12■□□□□ 0.97
WNT3P56703 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.12■□□□□ 0.97
WNT3P56703 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.12■□□□□ 0.97
WNT3P56703 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
WNT3P56703 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
WNT3P56703 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.11■□□□□ 0.97
WNT3P56703 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.11■□□□□ 0.97
WNT3P56703 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.11■□□□□ 0.97
WNT3P56703 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.11■□□□□ 0.97
WNT3P56703 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 MIR6722-201ENST00000617286 78 ntBASIC21.11■□□□□ 0.97
WNT3P56703 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.11■□□□□ 0.97
WNT3P56703 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
WNT3P56703 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
WNT3P56703 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
WNT3P56703 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.1■□□□□ 0.97
WNT3P56703 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 LINC00565-201ENST00000562710 2331 ntBASIC21.1■□□□□ 0.97
WNT3P56703 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 TSPY9P-201ENST00000440215 945 ntBASIC21.1■□□□□ 0.97
WNT3P56703 TSPY11P-201ENST00000442607 1045 ntBASIC21.1■□□□□ 0.97
WNT3P56703 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.1■□□□□ 0.97
WNT3P56703 UNC93B8-201ENST00000511903 705 ntBASIC21.1■□□□□ 0.97
WNT3P56703 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
WNT3P56703 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
WNT3P56703 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
WNT3P56703 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.1■□□□□ 0.97
WNT3P56703 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
WNT3P56703 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
WNT3P56703 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.09■□□□□ 0.97
WNT3P56703 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
WNT3P56703 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
WNT3P56703 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
WNT3P56703 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
WNT3P56703 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
WNT3P56703 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms