Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
SHMT1P34896 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.33■■□□□ 1.81
SHMT1P34896 TSPY26P-201ENST00000476365 1326 ntBASIC26.33■■□□□ 1.81
SHMT1P34896 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHMT1P34896 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHMT1P34896 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SHMT1P34896 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SHMT1P34896 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.32■■□□□ 1.8
SHMT1P34896 ABCB10P4-201ENST00000566803 2184 ntBASIC26.31■■□□□ 1.8
SHMT1P34896 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.31■■□□□ 1.8
SHMT1P34896 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SHMT1P34896 OR2I1P-207ENST00000453522 948 ntBASIC26.31■■□□□ 1.8
SHMT1P34896 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SHMT1P34896 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHMT1P34896 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC26.3■■□□□ 1.8
SHMT1P34896 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.3■■□□□ 1.8
SHMT1P34896 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHMT1P34896 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SHMT1P34896 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.3■■□□□ 1.8
SHMT1P34896 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHMT1P34896 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.3■■□□□ 1.8
SHMT1P34896 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC26.3■■□□□ 1.8
SHMT1P34896 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SHMT1P34896 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
SHMT1P34896 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SHMT1P34896 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.29■■□□□ 1.8
SHMT1P34896 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SHMT1P34896 AC079630.1-202ENST00000618127 1840 ntBASIC26.29■■□□□ 1.8
SHMT1P34896 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SHMT1P34896 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SHMT1P34896 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
SHMT1P34896 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHMT1P34896 IGHV3-19-201ENST00000521488 291 ntBASIC26.28■■□□□ 1.8
SHMT1P34896 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.28■■□□□ 1.8
SHMT1P34896 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.28■■□□□ 1.8
SHMT1P34896 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.28■■□□□ 1.8
SHMT1P34896 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHMT1P34896 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHMT1P34896 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
SHMT1P34896 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SHMT1P34896 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC26.27■■□□□ 1.8
SHMT1P34896 SP2-202ENST00000613139 908 ntTSL 5 BASIC26.27■■□□□ 1.8
SHMT1P34896 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
SHMT1P34896 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC26.27■■□□□ 1.8
SHMT1P34896 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHMT1P34896 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SHMT1P34896 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC26.26■■□□□ 1.79
SHMT1P34896 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC26.26■■□□□ 1.79
SHMT1P34896 AICDA-202ENST00000537228 667 ntTSL 5 BASIC26.26■■□□□ 1.79
SHMT1P34896 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC26.26■■□□□ 1.79
SHMT1P34896 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
SHMT1P34896 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.26■■□□□ 1.79
SHMT1P34896 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.26■■□□□ 1.79
SHMT1P34896 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.25■■□□□ 1.79
SHMT1P34896 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
SHMT1P34896 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SHMT1P34896 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
SHMT1P34896 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
SHMT1P34896 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 H19-210ENST00000439725 1929 ntTSL 2 BASIC26.24■■□□□ 1.79
SHMT1P34896 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC26.24■■□□□ 1.79
SHMT1P34896 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC26.24■■□□□ 1.79
SHMT1P34896 AC092666.2-201ENST00000613287 246 ntBASIC26.24■■□□□ 1.79
SHMT1P34896 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC26.24■■□□□ 1.79
SHMT1P34896 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.23■■□□□ 1.79
SHMT1P34896 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SHMT1P34896 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
SHMT1P34896 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC26.23■■□□□ 1.79
SHMT1P34896 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC26.23■■□□□ 1.79
SHMT1P34896 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SHMT1P34896 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
SHMT1P34896 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SHMT1P34896 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
SHMT1P34896 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
SHMT1P34896 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.22■■□□□ 1.79
SHMT1P34896 AK1-201ENST00000223836 736 ntTSL 3 BASIC26.22■■□□□ 1.79
SHMT1P34896 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
SHMT1P34896 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC26.22■■□□□ 1.79
SHMT1P34896 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
SHMT1P34896 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC26.22■■□□□ 1.79
SHMT1P34896 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SHMT1P34896 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms