Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A1P20908 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.71■■□□□ 1.07
COL5A1P20908 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A1P20908 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.71■■□□□ 1.07
COL5A1P20908 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL5A1P20908 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.7■■□□□ 1.06
COL5A1P20908 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL5A1P20908 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.69■■□□□ 1.06
COL5A1P20908 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A1P20908 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
COL5A1P20908 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.69■■□□□ 1.06
COL5A1P20908 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.69■■□□□ 1.06
COL5A1P20908 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.69■■□□□ 1.06
COL5A1P20908 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.69■■□□□ 1.06
COL5A1P20908 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL5A1P20908 AP005435.1-201ENST00000529293 1178 ntBASIC21.69■■□□□ 1.06
COL5A1P20908 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL5A1P20908 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.68■■□□□ 1.06
COL5A1P20908 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.68■■□□□ 1.06
COL5A1P20908 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
COL5A1P20908 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.68■■□□□ 1.06
COL5A1P20908 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.68■■□□□ 1.06
COL5A1P20908 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL5A1P20908 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A1P20908 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A1P20908 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.67■■□□□ 1.06
COL5A1P20908 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A1P20908 FP325331.1-202ENST00000623531 1380 ntBASIC21.67■■□□□ 1.06
COL5A1P20908 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.67■■□□□ 1.06
COL5A1P20908 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL5A1P20908 AP003733.4-201ENST00000623785 1697 ntBASIC21.67■■□□□ 1.06
COL5A1P20908 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
COL5A1P20908 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A1P20908 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A1P20908 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
COL5A1P20908 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.66■■□□□ 1.06
COL5A1P20908 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A1P20908 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A1P20908 AC142381.3-201ENST00000568208 1670 ntBASIC21.66■■□□□ 1.06
COL5A1P20908 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.66■■□□□ 1.06
COL5A1P20908 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.66■■□□□ 1.06
COL5A1P20908 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A1P20908 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.66■■□□□ 1.06
COL5A1P20908 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL5A1P20908 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.65■■□□□ 1.06
COL5A1P20908 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL5A1P20908 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL5A1P20908 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.65■■□□□ 1.06
COL5A1P20908 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.65■■□□□ 1.06
COL5A1P20908 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.65■■□□□ 1.06
COL5A1P20908 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.65■■□□□ 1.06
COL5A1P20908 NTF6G-201ENST00000591094 616 ntBASIC21.65■■□□□ 1.06
COL5A1P20908 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.65■■□□□ 1.06
COL5A1P20908 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL5A1P20908 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
COL5A1P20908 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 AC138932.3-201ENST00000567634 1902 ntBASIC21.65■■□□□ 1.06
COL5A1P20908 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL5A1P20908 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A1P20908 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.64■■□□□ 1.06
COL5A1P20908 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.64■■□□□ 1.06
COL5A1P20908 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL5A1P20908 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A1P20908 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.64■■□□□ 1.05
COL5A1P20908 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A1P20908 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.64■■□□□ 1.05
COL5A1P20908 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A1P20908 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.64■■□□□ 1.05
COL5A1P20908 TPRG1LP1-201ENST00000598702 760 ntBASIC21.64■■□□□ 1.05
COL5A1P20908 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL5A1P20908 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A1P20908 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
COL5A1P20908 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms