Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
HLA-DQA1P01909 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 EI24-213ENST00000618552 1747 ntTSL 5 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 CR559946.2-201ENST00000623684 991 ntBASIC16.74■□□□□ 0.27
HLA-DQA1P01909 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
HLA-DQA1P01909 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 GDI1-215ENST00000630693 786 ntTSL 4 BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HLA-DQA1P01909 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 AC148477.6-201ENST00000623746 465 ntBASIC16.72■□□□□ 0.27
HLA-DQA1P01909 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DQA1P01909 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 AC008813.1-201ENST00000536597 885 ntBASIC16.71■□□□□ 0.27
HLA-DQA1P01909 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DQA1P01909 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DQA1P01909 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DQA1P01909 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
HLA-DQA1P01909 AL161729.1-201ENST00000604104 1402 ntBASIC16.7■□□□□ 0.26
HLA-DQA1P01909 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 H19-210ENST00000439725 1929 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 MACF1-219ENST00000484793 834 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 MIR3648-2-201ENST00000581792 180 ntBASIC16.7■□□□□ 0.26
HLA-DQA1P01909 AC016575.1-201ENST00000607026 382 ntBASIC16.7■□□□□ 0.26
HLA-DQA1P01909 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 MIR3648-1-201ENST00000615959 180 ntBASIC16.7■□□□□ 0.26
HLA-DQA1P01909 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DQA1P01909 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms