Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 DUX4L3-201ENST00000630187 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L7-201ENST00000630678 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 DUX4L5-201ENST00000630834 1275 ntBASIC21.89■■□□□ 1.09
SDC3O75056 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.89■■□□□ 1.09
SDC3O75056 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SDC3O75056 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
SDC3O75056 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.88■■□□□ 1.09
SDC3O75056 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.88■■□□□ 1.09
SDC3O75056 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 MIR572-201ENST00000384983 95 ntBASIC21.88■■□□□ 1.09
SDC3O75056 AC012414.1-201ENST00000556676 535 ntBASIC21.88■■□□□ 1.09
SDC3O75056 AL499627.2-201ENST00000606283 725 ntBASIC21.88■■□□□ 1.09
SDC3O75056 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.88■■□□□ 1.09
SDC3O75056 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 AC142381.3-201ENST00000568208 1670 ntBASIC21.88■■□□□ 1.09
SDC3O75056 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SDC3O75056 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SDC3O75056 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
SDC3O75056 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.87■■□□□ 1.09
SDC3O75056 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.87■■□□□ 1.09
SDC3O75056 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SDC3O75056 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
SDC3O75056 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.87■■□□□ 1.09
SDC3O75056 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SDC3O75056 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.87■■□□□ 1.09
SDC3O75056 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.87■■□□□ 1.09
SDC3O75056 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SDC3O75056 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.87■■□□□ 1.09
SDC3O75056 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
SDC3O75056 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SDC3O75056 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
SDC3O75056 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SDC3O75056 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
SDC3O75056 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.86■■□□□ 1.09
SDC3O75056 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 AC027612.3-201ENST00000413684 1047 ntBASIC21.86■■□□□ 1.09
SDC3O75056 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.86■■□□□ 1.09
SDC3O75056 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SDC3O75056 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.86■■□□□ 1.09
SDC3O75056 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.86■■□□□ 1.09
SDC3O75056 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
SDC3O75056 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SDC3O75056 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
SDC3O75056 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.85■■□□□ 1.09
SDC3O75056 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.85■■□□□ 1.09
SDC3O75056 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.85■■□□□ 1.09
SDC3O75056 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SDC3O75056 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.85■■□□□ 1.09
SDC3O75056 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.84■■□□□ 1.09
SDC3O75056 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.84■■□□□ 1.09
SDC3O75056 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.84■■□□□ 1.09
SDC3O75056 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.84■■□□□ 1.09
SDC3O75056 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SDC3O75056 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SDC3O75056 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.83■■□□□ 1.09
SDC3O75056 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.83■■□□□ 1.09
SDC3O75056 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
SDC3O75056 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.83■■□□□ 1.09
SDC3O75056 AC090192.1-201ENST00000517740 490 ntBASIC21.83■■□□□ 1.09
SDC3O75056 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.83■■□□□ 1.09
SDC3O75056 DUX4L4-201ENST00000566884 1269 ntBASIC21.83■■□□□ 1.09
SDC3O75056 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SDC3O75056 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SDC3O75056 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SDC3O75056 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
SDC3O75056 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SDC3O75056 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.82■■□□□ 1.08
SDC3O75056 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SDC3O75056 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SDC3O75056 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.82■■□□□ 1.08
SDC3O75056 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms